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Cmc01g0025831 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0025831
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
Genome locationCMiso1.1chr01:26772623..26773135
RNA-Seq ExpressionCmc01g0025831
SyntenyCmc01g0025831
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032571.1 Beta-galactosidase [Cucumis melo var. makuwa]3.0e-8793.9Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRL HPNFTYM+YLFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVW PSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG   +K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

KAA0034029.1 Beta-galactosidase [Cucumis melo var. makuwa]5.1e-8793.29Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRLGHPNFTYM+YLFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPF LIHSD+W PSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG    K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]3.3e-8692.68Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPF LIHSDVW PSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG    K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]3.3e-8692.68Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPF LIHSDVW PSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG    K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]3.3e-8692.68Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPF LIHSDVW PSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG    K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

TrEMBL top hitse value%identityAlignment
A0A5A7SSP2 Beta-galactosidase1.4e-8793.9Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRL HPNFTYM+YLFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVW PSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG   +K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

A0A5A7SXY5 Beta-galactosidase2.4e-8793.29Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRLGHPNFTYM+YLFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPF LIHSD+W PSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG    K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

A0A5A7VLQ7 Beta-galactosidase1.6e-8692.68Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPF LIHSDVW PSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG    K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

A0A5D3BJK7 Beta-galactosidase1.6e-8692.68Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPF LIHSDVW PSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG    K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

A0A5D3C4T4 Beta-galactosidase1.6e-8692.68Show/hide
Query:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE
        MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPF LIHSDVW PSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSE
Subjt:  MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE

Query:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        VPSIFQNFYHTIKTQFHTKIAILRSDNGR+FQNHNLSEFLASKGIVHQTSCAYTPQQNG    K
Subjt:  VPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

SwissProt top hitse value%identityAlignment
O13527 Truncated transposon Ty1-A Gag-Pol polyprotein1.4e-1027.64Show/hide
Query:  IDVSSLSCDVCIRAKQHRVSFPSQPYKPT-QPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE--VPSIFQNFYHTIKTQFHTKIAI
        ID     C +    K   +      Y+ + +PF  +H+D++ P      S   +F++F D+ T+L WVY + D+ E  +  +F      IK QF   + +
Subjt:  IDVSSLSCDVCIRAKQHRVSFPSQPYKPT-QPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSE--VPSIFQNFYHTIKTQFHTKIAI

Query:  LRSDNGRKFQNHNLSEFLASKGI
        ++ D G ++ N  L +FL   GI
Subjt:  LRSDNGRKFQNHNLSEFLASKGI

P04146 Copia protein1.0e-1833.53Show/hide
Query:  LWHFRLGHPNFTYM-----KYLF--PHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKP--TQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWV
        LWH R GH +   +     K +F    L   +++S   C+ C+  KQ R+ F     K    +P  ++HSDV  P    T   K +FV F+D  T     
Subjt:  LWHFRLGHPNFTYM-----KYLF--PHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKP--TQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWV

Query:  YLITDKSEVPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNG
        YLI  KS+V S+FQ+F    +  F+ K+  L  DNGR++ ++ + +F   KGI +  +  +TPQ NG
Subjt:  YLITDKSEVPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNG

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.8e-2435Show/hide
Query:  LWHFRLGHPNFTYMKYLFPHLFPKI--DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS
        LWH R+GH +   ++ L            +   CD C+  KQHRVSF +   +      L++SDV  P ++ +  G ++FVTFIDD +R  WVY++  K 
Subjt:  LWHFRLGHPNFTYMKYLFPHLFPKI--DVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS

Query:  EVPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNG
        +V  +FQ F+  ++ +   K+  LRSDNG ++ +    E+ +S GI H+ +   TPQ NG
Subjt:  EVPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNG

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-2136.53Show/hide
Query:  WHFRLGHP-----NFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITD
        WH RLGHP     N     Y    L P      LSC  C+  K ++V F       T+P   I+SDVWS S + +    R++V F+D  TR TW+Y +  
Subjt:  WHFRLGHP-----NFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITD

Query:  KSEVPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        KS+V   F  F + ++ +F T+I    SDNG +F    L E+ +  GI H TS  +TP+ NG    K
Subjt:  KSEVPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.4e-2336.97Show/hide
Query:  WHFRLGHPNFTYMKYLFP-HLFPKIDVSS--LSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS
        WH RLGHP+   +  +   H  P ++ S   LSC  C   K H+V F +     ++P   I+SDVWS S + +    R++V F+D  TR TW+Y +  KS
Subjt:  WHFRLGHPNFTYMKYLFP-HLFPKIDVSS--LSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKS

Query:  EVPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK
        +V   F  F   ++ +F T+I  L SDNG +F    L ++L+  GI H TS  +TP+ NG    K
Subjt:  EVPSIFQNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTGGCATTTTCGGTTAGGTCACCCGAACTTTACGTATATGAAATACTTGTTTCCTCATCTCTTTCCTAAAATAGATGTCTCCTCGTTATCTTGTGATGTG
TGTATCCGGGCTAAACAACATCGGGTCTCTTTTCCCTCACAACCATATAAACCTACACAACCATTTACACTCATCCATAGTGACGTTTGGAGTCCTTCCAAGGTC
ACCACCTCCTCGGGAAAGCGGTGGTTTGTAACTTTCATCGATGACCATACCCGTCTTACCTGGGTCTACCTTATCACAGATAAATCTGAGGTTCCATCCATTTTC
CAAAACTTCTATCATACTATCAAAACACAATTTCATACAAAAATTGCAATTCTTCGGAGTGATAATGGTCGGAAATTCCAAAACCATAACCTTAGTGAATTTCTA
GCCTCCAAGGGGATTGTTCACCAAACCTCGTGTGCCTACACTCCTCAACAAAATGGATGGCCGAACGAAAAAACCGTCACCTTGTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGTGGCATTTTCGGTTAGGTCACCCGAACTTTACGTATATGAAATACTTGTTTCCTCATCTCTTTCCTAAAATAGATGTCTCCTCGTTATCTTGTGATGTG
TGTATCCGGGCTAAACAACATCGGGTCTCTTTTCCCTCACAACCATATAAACCTACACAACCATTTACACTCATCCATAGTGACGTTTGGAGTCCTTCCAAGGTC
ACCACCTCCTCGGGAAAGCGGTGGTTTGTAACTTTCATCGATGACCATACCCGTCTTACCTGGGTCTACCTTATCACAGATAAATCTGAGGTTCCATCCATTTTC
CAAAACTTCTATCATACTATCAAAACACAATTTCATACAAAAATTGCAATTCTTCGGAGTGATAATGGTCGGAAATTCCAAAACCATAACCTTAGTGAATTTCTA
GCCTCCAAGGGGATTGTTCACCAAACCTCGTGTGCCTACACTCCTCAACAAAATGGATGGCCGAACGAAAAAACCGTCACCTTGTGGAAGTAG
Protein sequenceShow/hide protein sequence
MLWHFRLGHPNFTYMKYLFPHLFPKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWSPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVPSIF
QNFYHTIKTQFHTKIAILRSDNGRKFQNHNLSEFLASKGIVHQTSCAYTPQQNGWPNEKTVTLWK