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Cmc01g0025871 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0025871
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionpoly(A)-specific ribonuclease PARN-like
Genome locationCMiso1.1chr01:26874553..26875247
RNA-Seq ExpressionCmc01g0025871
SyntenyCmc01g0025871
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059619.1 poly(A)-specific ribonuclease PARN-like [Cucumis melo var. makuwa]1.1e-3292.96Show/hide
Query:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        ML++CSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAP +KASLEGSHEV CEEFYV
Subjt:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
TYK08152.1 poly(A)-specific ribonuclease PARN-like [Cucumis melo var. makuwa]1.1e-3292.96Show/hide
Query:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        ML++CSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAP +KASLEGSHEV CEEFYV
Subjt:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
XP_008451634.1 PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo]1.1e-3292.96Show/hide
Query:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        ML++CSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAP +KASLEGSHEV CEEFYV
Subjt:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
XP_038899638.1 poly(A)-specific ribonuclease PARN-like isoform X1 [Benincasa hispida]2.3e-2573.24Show/hide
Query:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        MLDEC+NVSSSFSPYHH+P+DE++KIWA++  K SCRHL+FLWGFR+GMTA  +K +LEGSHEV CEEF V
Subjt:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
XP_038899639.1 poly(A)-specific ribonuclease PARN-like isoform X2 [Benincasa hispida]2.3e-2573.24Show/hide
Query:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        MLDEC+NVSSSFSPYHH+P+DE++KIWA++  K SCRHL+FLWGFR+GMTA  +K +LEGSHEV CEEF V
Subjt:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
TrEMBL top hitse value%identityAlignment
A0A1S3BT38 poly(A)-specific ribonuclease PARN-like5.5e-3392.96Show/hide
Query:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        ML++CSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAP +KASLEGSHEV CEEFYV
Subjt:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
A0A5A7V1F6 Poly(A)-specific ribonuclease PARN-like5.5e-3392.96Show/hide
Query:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        ML++CSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAP +KASLEGSHEV CEEFYV
Subjt:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
A0A5D3CA51 Poly(A)-specific ribonuclease PARN-like5.5e-3392.96Show/hide
Query:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        ML++CSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAP +KASLEGSHEV CEEFYV
Subjt:  MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
A0A6J1GP80 poly(A)-specific ribonuclease PARN-like isoform X12.8e-2170Show/hide
Query:  LDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        LD C+NV  SFSP HHE +DED+KI  ++VRK SCRHLVFLWGFR+GMTA  +K +LEGSHEV CEEF V
Subjt:  LDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
A0A6J1GQJ8 poly(A)-specific ribonuclease PARN-like isoform X22.8e-2170Show/hide
Query:  LDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        LD C+NV  SFSP HHE +DED+KI  ++VRK SCRHLVFLWGFR+GMTA  +K +LEGSHEV CEEF V
Subjt:  LDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
SwissProt top hitse value%identityAlignment
Q8W4C3 Poly(A)-specific ribonuclease PARN-like6.5e-0745.1Show/hide
Query:  DEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        DE+VK+W+++ R+ S  +LVF+WG  + MTA  +K  L+ SH V   EF V
Subjt:  DEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
Arabidopsis top hitse value%identityAlignment
AT3G25430.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.6e-0845.1Show/hide
Query:  DEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV
        DE+VK+W+++ R+ S  +LVF+WG  + MTA  +K  L+ SH V   EF V
Subjt:  DEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGACGAGTGTTCAAATGTTTCTTCTTCATTCTCCCCTTACCACCACGAACCCAAGGATGAGGACGTTAAGATCTGGGCTCGGGATGTTAGAAAAGCAAGTTGTAG
GCATTTGGTTTTCTTGTGGGGATTTAGAGAAGGGATGACGGCTCCGTTTGTAAAAGCTTCACTTGAAGGATCCCATGAAGTTTTATGTGAAGAGTTTTATGTTTGA
mRNA sequenceShow/hide mRNA sequence
GATGCTCGACGAGTGTTCAAATGTTTCTTCTTCATTCTCCCCTTACCACCACGAACCCAAGGATGAGGACGTTAAGATCTGGGCTCGGGATGTTAGAAAAGCAAGTTGTA
GGCATTTGGTTTTCTTGTGGGGATTTAGAGAAGGGATGACGGCTCCGTTTGTAAAAGCTTCACTTGAAGGATCCCATGAAGTTTTATGTGAAGAGTTTTATGTTTGATTC
GTGGACAAGGAATGTGCCATTATCGTTTTCTCACAACCAGGCCTATCCGAGACCTTCCTTGATGCAATAAATAGTGATGGCAATGTTGGATCTTTAAGAGAGATGGTATC
CGAAGGGATAAGAGCAGCAGGTTATGAAACTTACAAAAGAATGTGTAGGTTTGATTTATGGGAAGCAGATTTAGCTGAGTCCCTGGAGAGAGCCTTTTTCAAAGCCAACC
CTGAAACCGCTCAGTTAGATATTTGGCATCCATGATAAAACCTTTTAAGTTTTGGTTTATTCCTTACAGCAAGCCTTAAAACTTTATGATGATGGAAGATTTTTCTTTCT
GTACATACTGTTGGCCATTTCAGGGCTATTGCTCTTTTTAAACATTTTGAACAAATCAGGTGAGAGATAATTTCAATTCGGTAATTCTGCACCTAACTAGTATTTGATAA
TGGTGTCCATTTTAAAAGCATCCTGAATATTATCC
Protein sequenceShow/hide protein sequence
MLDECSNVSSSFSPYHHEPKDEDVKIWARDVRKASCRHLVFLWGFREGMTAPFVKASLEGSHEVLCEEFYV