CuGenDBv2

Gene ID	Cmc01g0026251
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr01:27180214..27180567
RNA-Seq Expression	Cmc01g0026251
Synteny	Cmc01g0026251
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033486.1 reverse transcriptase [Cucumis melo var. makuwa]

2.9e-49

84.62

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        M LCIDY+ELNKVTV NCYPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AF  RY HYEF+VMSF LTNAPAVFMDLMN++FKDFLD+FV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IVFIDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

KAA0037327.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.4e-50

87.18

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        MHLCIDY+ELNKVTV N YPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AF  RYEHYEFIVMSF LTNAP VFMDLMNK+FKDFLDTFV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IVFIDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

KAA0045381.1 pol protein [Cucumis melo var. makuwa]

2.9e-49

85.47

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        M LCIDY+ELNKVTVNNCYPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AF  RY HYEFIVMSF LTNAPAVFMDLMN++FK+FLDTFV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IV IDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

KAA0053289.1 pol protein [Cucumis melo var. makuwa]

5.8e-50

85.47

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        M LCIDY++LNKVT+ N YPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AFCFRY HYEFIVMSF LTNAPAVFMDLMN++FKDFLDTFV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IVFIDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

TYK24123.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.4e-50

87.18

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        MHLCIDY+ELNKVTV N YPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AF  RYEHYEFIVMSF LTNAP VFMDLMNK+FKDFLDTFV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IVFIDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SU25 Reverse transcriptase

1.4e-49

84.62

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        M LCIDY+ELNKVTV NCYPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AF  RY HYEF+VMSF LTNAPAVFMDLMN++FKDFLD+FV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IVFIDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

A0A5A7T6Z0 Ty3-gypsy retrotransposon protein

2.2e-50

87.18

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        MHLCIDY+ELNKVTV N YPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AF  RYEHYEFIVMSF LTNAP VFMDLMNK+FKDFLDTFV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IVFIDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

A0A5A7TV37 Pol protein

1.4e-49

85.47

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        M LCIDY+ELNKVTVNNCYPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AF  RY HYEFIVMSF LTNAPAVFMDLMN++FK+FLDTFV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IV IDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

A0A5A7UII7 Pol protein

2.8e-50

85.47

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        M LCIDY++LNKVT+ N YPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AFCFRY HYEFIVMSF LTNAPAVFMDLMN++FKDFLDTFV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IVFIDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

A0A5D3DKH1 Ty3-gypsy retrotransposon protein

2.2e-50

87.18

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        MHLCIDY+ELNKVTV N YPL RIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDI K AF  RYEHYEFIVMSF LTNAP VFMDLMNK+FKDFLDTFV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        IVFIDDIL+YSK EA+H
Subjt:  IVFIDDILVYSKIEAKH

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.2e-20

39.32

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        + + +DYK LNK    N YPL  I+ L  ++QG+TIF+K+DL+S YH +R+R  D  K+AF      +E++VM + ++ APA F   +N +  +  ++ V
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        + ++DDIL++SK E++H
Subjt:  IVFIDDILVYSKIEAKH

P0CT35 Transposon Tf2-2 polyprotein

2.2e-20

39.32

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        + + +DYK LNK    N YPL  I+ L  ++QG+TIF+K+DL+S YH +R+R  D  K+AF      +E++VM + ++ APA F   +N +  +  ++ V
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        + ++DDIL++SK E++H
Subjt:  IVFIDDILVYSKIEAKH

P0CT36 Transposon Tf2-3 polyprotein

2.2e-20

39.32

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        + + +DYK LNK    N YPL  I+ L  ++QG+TIF+K+DL+S YH +R+R  D  K+AF      +E++VM + ++ APA F   +N +  +  ++ V
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        + ++DDIL++SK E++H
Subjt:  IVFIDDILVYSKIEAKH

P0CT41 Transposon Tf2-12 polyprotein

2.2e-20

39.32

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        + + +DYK LNK    N YPL  I+ L  ++QG+TIF+K+DL+S YH +R+R  D  K+AF      +E++VM + ++ APA F   +N +  +  ++ V
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYSKIEAKH
        + ++DDIL++SK E++H
Subjt:  IVFIDDILVYSKIEAKH

P31843 RNA-directed DNA polymerase homolog

1.6e-26

52.25

Show/hide

Query:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV
        + +CIDY+ L KVT+ N YP+ R+DDLFD+L  AT F+K+DLRSGY Q+RI   D  K     RY  +EF VM F LTNA A F +LMN +  ++LD FV
Subjt:  MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFV

Query:  IVFIDDILVYS
        +V++DD++VY+
Subjt:  IVFIDDILVYS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCACCTTTGCATTGATTACAAAGAGTTGAATAAGGTGACGGTCAATAACTGTTATCCATTACTTAGAATCGATGACTTGTTTGATCAGTTACAAGGAGCCACTATATT
CTCTAAGATTGACTTACGTTCAGGCTATCACCAGTTGAGGATTAGAGACAGTGATATTTCTAAGATTGCTTTTTGTTTCAGATATGAACATTACGAGTTCATTGTAATGT
CTTTTAGCTTGACAAATGCTCCTGCTGTATTTATGGATCTGATGAACAAGCTATTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTCATTGATGATATCTTGGTTTAC
TCCAAGATAGAGGCTAAGCATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MHLCIDYKELNKVTVNNCYPLLRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDISKIAFCFRYEHYEFIVMSFSLTNAPAVFMDLMNKLFKDFLDTFVIVFIDDILVY
SKIEAKH

Cmc01g0026251 (gene) of Melon (Charmono) v1.1 genome