CuGenDBv2

Gene ID	Cmc01g0026831
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr01:27936657..27937160
RNA-Seq Expression	Cmc01g0026831
Synteny	Cmc01g0026831
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036988.1 gag/pol protein [Cucumis melo var. makuwa]

5.5e-78

88.02

Show/hide

Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQT+K +RKSTSGSVFTLNGGAVVWRSIKQSCIADST+EAE++ ACEAAKEAVWLKKFLTDLE+VPNMHL ITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREPRSHKRGKHIER YHLIREI+H+G+V+VT ISSEQN+ADPFTKALTAKV ESHL+GL L SL
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

KAA0041899.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

1.2e-80

90.42

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Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKD+RKSTSGS+FTLNGGAV+WRSIKQSCIA+STMEAE++  CEAAKEAVWLKKF TDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREPRSHKRGKHIERKYHLIREI+HRGDVIVTKIS EQN+ADPFTKALTAKV ES LHGL LR L
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

KAA0051190.1 gag/pol protein [Cucumis melo var. makuwa]

8.5e-79

89.22

Show/hide

Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        M VYGSKDLILTGYT+SDFQTDKD+RKST GSVFTLNGGAVVWRSIKQSCI DSTMEAE++ ACEAAKE VWLKKFLTDLEVV NMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREP+SHKRGKHIERKYHLIREI+H+GDVI TKISSEQN+ADPFTKALTAKV ESHLHGL LR L
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

KAA0051362.1 gag/pol protein [Cucumis melo var. makuwa]

7.2e-78

88.02

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Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKD RKSTSGSVFTLNGGA+VWRSI+QSCI DS MEAE++  CEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREPRSHKR K+IERKYHLIR+I+HRGDV VTKISSEQN+ DPFTKAL AKV ESHLHGL LR L
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

KAA0059674.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

5.5e-86

98.2

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Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWR+IKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKV ESHLHGL LRSL
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2H7 Gag/pol protein

2.7e-78

88.02

Show/hide

Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQT+K +RKSTSGSVFTLNGGAVVWRSIKQSCIADST+EAE++ ACEAAKEAVWLKKFLTDLE+VPNMHL ITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREPRSHKRGKHIER YHLIREI+H+G+V+VT ISSEQN+ADPFTKALTAKV ESHL+GL L SL
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

A0A5A7TKJ0 Retrovirus-related pol polyprotein from transposon tnt 1-94

5.7e-81

90.42

Show/hide

Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKD+RKSTSGS+FTLNGGAV+WRSIKQSCIA+STMEAE++  CEAAKEAVWLKKF TDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREPRSHKRGKHIERKYHLIREI+HRGDVIVTKIS EQN+ADPFTKALTAKV ES LHGL LR L
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

A0A5A7U6B9 Gag/pol protein

3.5e-78

88.02

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Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKD RKSTSGSVFTLNGGA+VWRSI+QSCI DS MEAE++  CEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREPRSHKR K+IERKYHLIR+I+HRGDV VTKISSEQN+ DPFTKAL AKV ESHLHGL LR L
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

A0A5A7U7L0 Gag/pol protein

4.1e-79

89.22

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Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        M VYGSKDLILTGYT+SDFQTDKD+RKST GSVFTLNGGAVVWRSIKQSCI DSTMEAE++ ACEAAKE VWLKKFLTDLEVV NMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREP+SHKRGKHIERKYHLIREI+H+GDVI TKISSEQN+ADPFTKALTAKV ESHLHGL LR L
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

A0A5A7UX57 Retrovirus-related pol polyprotein from transposon tnt 1-94

2.7e-86

98.2

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Query:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWR+IKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL
        ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKV ESHLHGL LRSL
Subjt:  ANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.3e-21

37.76

Show/hide

Query:  LTGYTDSDFQTDKDSRKSTSGSVFTL-NGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSH
        + GY DSD+   +  RKST+G +F + +   + W + +Q+ +A S+ EAE++   EA +EA+WLK  LT + +   +  PI +Y DN G ++ +  P  H
Subjt:  LTGYTDSDFQTDKDSRKSTSGSVFTL-NGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSH

Query:  KRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTA
        KR KHI+ KYH  RE +    + +  I +E  +AD FTK L A
Subjt:  KRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTA

P0CV72 Secreted RxLR effector protein 161

4.6e-11

53.97

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Query:  LTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWL
        L GY+D+D+  D +SR+STSG +F LNGG V WRS KQ  +A S+ E E++   EA +EAVWL
Subjt:  LTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.9e-29

44.3

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Query:  LVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVA
        L +G  D IL GYTD+D   D D+RKS++G +FT +GGA+ W+S  Q C+A ST EAE+I A E  KE +WLK+FL +L +    ++   +YCD+  A+ 
Subjt:  LVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVA

Query:  NSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKAL
         S+    H R KHI+ +YH IRE++    + V KIS+ +N AD  TK +
Subjt:  NSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKAL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.1e-15

34.68

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Query:  LVYGSK-DLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        L Y S+ ++ L  ++D+ FQ+ KD+R+ST+G    L    + W+S KQ  ++ S+ EAE+     A  E +WL +F  +L++   +  P  L+CDN+ A+
Subjt:  LVYGSK-DLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIERKYHLIRE
          +     H+R KHIE   H +RE
Subjt:  ANSREPRSHKRGKHIERKYHLIRE

Sequences

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CDS sequence

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ATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATTCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAA
TGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCTGACTCCACTATGGAAGCTGAATTTATAGTTGCCTGTGAAGCAGCCAAAGAAGCAGTATGGCTTA
AAAAATTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATACTGTGACAATAGTGGTGCAGTTGCAAATTCACGAGAACCTAGAAGCCATAAA
CGAGGAAAGCATATTGAACGAAAGTACCATTTGATCAGGGAGATCATACATCGAGGAGACGTTATAGTAACAAAAATCTCCTCCGAGCAAAACATAGCTGATCCATTTAC
AAAAGCTCTCACGGCTAAAGTGTGTGAGAGCCACCTGCATGGTTTAAGTCTACGCAGTTTGTAA

mRNA sequence

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Protein sequence

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MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHK
RGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

Cmc01g0026831 (gene) of Melon (Charmono) v1.1 genome