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Cmc01g0027151 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0027151
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPSII 6.1 kDa protein
Genome locationCMiso1.1chr01:28244301..28245659
RNA-Seq ExpressionCmc01g0027151
SyntenyCmc01g0027151
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]2.9e-6499.28Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]2.3e-6197.1Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]3.4e-65100Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]3.6e-5991.78Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST

Query:  EGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        EGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  EGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]3.0e-6195.65Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA A  RTSLVQNRP LP+ASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein1.1e-6197.1Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein1.6e-65100Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein1.4e-6499.28Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein5.6e-5890.58Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR+SLVQNRP LP+ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein1.1e-5689.13Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAV SA+AAAVR+SLVQNRP LP+ASP  FLLGLPALGK+GGVRC ++GK NGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IW FYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic8.7e-3261.27Show/hide
Query:  MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTG
        MA+ T++A+  +A R +L+  +P +  ++P   +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTG
Subjt:  MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTG

Query:  LPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LPFGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  LPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic7.6e-3662.14Show/hide
Query:  MAAVTSAAAAAV--RTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA +T++++A++  R SLV N     S+SP   +LGLP++ K+  V CS+E K +      ++N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLP
Subjt:  MAAVTSAAAAAV--RTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIWA Y VY S LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic8.2e-2251.82Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA V++AAA +V    V   P           LGLP +  +    VRC+   +        ++  G GASL+A A  A   +PAMALVDER+STEGTGL 
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESG
         GLSNNLLGWILLGVFGLIW+ Y +YTS LEEDEESG
Subjt:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic4.2e-1041.25Show/hide
Query:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL
        S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +WA + +    L   ED + GL L
Subjt:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W6.2e-3361.27Show/hide
Query:  MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTG
        MA+ T++A+  +A R +L+  +P +  ++P   +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTG
Subjt:  MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTG

Query:  LPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LPFGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  LPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCGCCGTCCGCACTTCTCTGGTCCAGAACCGCCCCGCTCTGCCGTCGGCTTCACCCGCCCCATTCCTTCTTGGGTTACCTGC
CTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAAGGAAATGGAGAAGTTGAAAACAAATCAAGCAACTTGGGGATGGGGGCGTCGTTGATAGCTGCGGCGT
GTGCTGCAACGATGTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTG
TTGGGAGTTTTTGGTCTCATTTGGGCATTTTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
TTTGTGTGGTACCACTCAAAACCCAACAAATAATATTAATTCTTTCCAAACCCTCCCTTTGATCTCCACTCTCCAAATTCCCAATTCCTTGTTCCTTTTTTCCTTTCAAA
ATTTGAAGACCAAACAAATCTAATGGCCGCCGTCACCTCCGCCGCCGCTGCCGCCGTCCGCACTTCTCTGGTCCAGAACCGCCCCGCTCTGCCGTCGGCTTCACCCGCCC
CATTCCTTCTTGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAAGGAAATGGAGAAGTTGAAAACAAATCAAGCAACTTGGGGATGGGG
GCGTCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAA
CAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGGTCTCATTTGGGCATTTTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAAG
CCAACATTTCCCCATCTTACTTACTATTATTAATTATTGCTACTTTTGTTATTGTTGTGGATATTTTGCCTTTGGCTTGAATTGTGTGGAAGCTTTTGAATTCATATCAT
TCAAGCCTTTTGTTCGGGTATCAATGTAGAAAAAAGTAAATGTGGT
Protein sequenceShow/hide protein sequence
MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL
LGVFGLIWAFYIVYTSTLEEDEESGLSL