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Cmc01g0027201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0027201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr01:28285287..28285736
RNA-Seq ExpressionCmc01g0027201
SyntenyCmc01g0027201
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.0e-4686.73Show/hide
Query:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK
        ++FQDKTC NHVCLLHKSLYGLKQAPRAWFE FTSYLFTLGFVAS+ DPSLFIRSVGS LTYLLLYV DIIVTGP+Y YI VLKNQLAL FKISD GPLK
Subjt:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK

Query:  YILDLEIQSSIDG
        Y L LEIQSSIDG
Subjt:  YILDLEIQSSIDG

KAA0057165.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.5e-4686.73Show/hide
Query:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK
        + FQDKTC NHVCLL+KSLYGLKQAPRAWFE F SYLFTL FVAS+ADPSLFIRSVGSSLTYLLLYV +IIV GPDY YIFVLKNQLAL FKISDLGPLK
Subjt:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK

Query:  YILDLEIQSSIDG
        Y L LEIQSSIDG
Subjt:  YILDLEIQSSIDG

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.3e-4889.38Show/hide
Query:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK
        + FQ+KTC NHVCLLHKSLYGLKQAPRAWFE FTSYLFTLGFVAS+ADPSLFIRSVGSSLTYLLLYVDDIIVTGPDY YI  LKNQLAL FKISDLGPLK
Subjt:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK

Query:  YILDLEIQSSIDG
        Y L LEIQSSIDG
Subjt:  YILDLEIQSSIDG

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.0e-4686.73Show/hide
Query:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK
        ++FQDKTC NHVCLLHKSLYGLKQAPRAWFE FTSYLFTLGFVAS+ DPSLFIRSVGS LTYLLLYV DIIVTGP+Y YI VLKNQLAL FKISD GPLK
Subjt:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK

Query:  YILDLEIQSSIDG
        Y L LEIQSSIDG
Subjt:  YILDLEIQSSIDG

TYK00083.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.6e-4476.15Show/hide
Query:  QNQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVL
        Q  V++SQ         + FQDKTC NHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFV S+ADPSLFIRSVGSSLTYLLLYVDDIIVTGPD SYI +L
Subjt:  QNQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVL

Query:  KNQLALGFKISDLGPLKYILDLEIQSSIDG
        K QLAL F+ISDLGPLKY L L+I S  +G
Subjt:  KNQLALGFKISDLGPLKYILDLEIQSSIDG

TrEMBL top hitse value%identityAlignment
A0A5A7UTE5 Putative mitochondrial protein2.4e-4686.73Show/hide
Query:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK
        ++FQDKTC NHVCLLHKSLYGLKQAPRAWFE FTSYLFTLGFVAS+ DPSLFIRSVGS LTYLLLYV DIIVTGP+Y YI VLKNQLAL FKISD GPLK
Subjt:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK

Query:  YILDLEIQSSIDG
        Y L LEIQSSIDG
Subjt:  YILDLEIQSSIDG

A0A5A7UZE5 Putative mitochondrial protein2.6e-4889.38Show/hide
Query:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK
        + FQ+KTC NHVCLLHKSLYGLKQAPRAWFE FTSYLFTLGFVAS+ADPSLFIRSVGSSLTYLLLYVDDIIVTGPDY YI  LKNQLAL FKISDLGPLK
Subjt:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK

Query:  YILDLEIQSSIDG
        Y L LEIQSSIDG
Subjt:  YILDLEIQSSIDG

A0A5D3BEU0 Putative mitochondrial protein2.4e-4686.73Show/hide
Query:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK
        ++FQDKTC NHVCLLHKSLYGLKQAPRAWFE FTSYLFTLGFVAS+ DPSLFIRSVGS LTYLLLYV DIIVTGP+Y YI VLKNQLAL FKISD GPLK
Subjt:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK

Query:  YILDLEIQSSIDG
        Y L LEIQSSIDG
Subjt:  YILDLEIQSSIDG

A0A5D3BJZ6 Putative mitochondrial protein2.2e-4476.15Show/hide
Query:  QNQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVL
        Q  V++SQ         + FQDKTC NHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFV S+ADPSLFIRSVGSSLTYLLLYVDDIIVTGPD SYI +L
Subjt:  QNQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVL

Query:  KNQLALGFKISDLGPLKYILDLEIQSSIDG
        K QLAL F+ISDLGPLKY L L+I S  +G
Subjt:  KNQLALGFKISDLGPLKYILDLEIQSSIDG

A0A5D3DUH6 Putative mitochondrial protein4.1e-4686.73Show/hide
Query:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK
        + FQDKTC NHVCLL+KSLYGLKQAPRAWFE F SYLFTL FVAS+ADPSLFIRSVGSSLTYLLLYV +IIV GPDY YIFVLKNQLAL FKISDLGPLK
Subjt:  SNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLK

Query:  YILDLEIQSSIDG
        Y L LEIQSSIDG
Subjt:  YILDLEIQSSIDG

SwissProt top hitse value%identityAlignment
P04146 Copia protein8.3e-1237.14Show/hide
Query:  NHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVG--SSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEI
        ++VC L+K++YGLKQA R WFE F   L    FV SS D  ++I   G  +   Y+LLYVDD+++   D + +   K  L   F+++DL  +K+ + + I
Subjt:  NHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVG--SSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEI

Query:  QSSID
        +   D
Subjt:  QSSID

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-1441.24Show/hide
Query:  VCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVG-SSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEI
        VC L+KSLYGLKQAPR W+  F S++ +  ++ + +DP ++ +    ++   LLLYVDD+++ G D   I  LK  L+  F + DLGP + IL ++I
Subjt:  VCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVG-SSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEI

P25600 Putative transposon Ty5-1 protein YCL074W1.6e-1031.82Show/hide
Query:  NHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEIQS
        ++V  L+  +YGLKQAP  W E   + L  +GF     +  L+ RS      Y+ +YVDD++V  P       +K +L   + + DLG +   L L I  
Subjt:  NHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEIQS

Query:  SIDGELNISI
        S +G++ +S+
Subjt:  SIDGELNISI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.2e-2043.44Show/hide
Query:  NQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLK
        + V++SQ P         F DK   N+VC L K+LYGLKQAPRAW+    +YL T+GFV S +D SLF+   G S+ Y+L+YVDDI++TG D + +    
Subjt:  NQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLK

Query:  NQLALGFKISDLGPLKYILDLE
        + L+  F + D   L Y L +E
Subjt:  NQLALGFKISDLGPLKYILDLE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.6e-1840.98Show/hide
Query:  NQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLK
        ++V++SQ P         F DK   ++VC L K++YGLKQAPRAW+    +YL T+GFV S +D SLF+   G S+ Y+L+YVDDI++TG D   +    
Subjt:  NQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLK

Query:  NQLALGFKISDLGPLKYILDLE
        + L+  F + +   L Y L +E
Subjt:  NQLALGFKISDLGPLKYILDLE

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.2e-1847.12Show/hide
Query:  NHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEIQS
        N VC L KS+YGLKQA R WF  F+  L   GFV S +D + F++   +    +L+YVDDII+   + + +  LK+QL   FK+ DLGPLKY L LEI  
Subjt:  NHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEIQS

Query:  SIDG
        S  G
Subjt:  SIDG

ATMG00810.1 DNA/RNA polymerases superfamily protein1.6e-0544.23Show/hide
Query:  YLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEIQSSIDG
        YLLLYVDDI++TG   + + +L  QL+  F + DLGP+ Y L ++I++   G
Subjt:  YLLLYVDDIIVTGPDYSYIFVLKNQLALGFKISDLGPLKYILDLEIQSSIDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATGCAAACTCGAGCAAAATCAGGTATTTTTAAGCCAAAGGCCTTTCACATTAAACAATTGCTCTTCCAACTTCCAAGATAAAACATGTCTCAATCATGTGTGTCT
CTTACACAAGAGTCTCTATGGTCTCAAACAGGCCCCTCGCGCTTGGTTTGAAAGCTTTACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTAGCGCTGATCCTTCAT
TATTCATTCGATCAGTCGGATCTTCTCTCACTTACTTACTTTTGTATGTAGATGACATCATTGTCACTGGACCTGACTATTCATACATTTTTGTTCTTAAAAACCAATTG
GCCCTAGGATTCAAAATATCCGACCTTGGTCCTTTAAAGTACATTCTTGATCTCGAAATCCAATCCTCCATCGATGGCGAGCTAAATATCTCAATAATCTCCTCCACACA
TCGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTATGCAAACTCGAGCAAAATCAGGTATTTTTAAGCCAAAGGCCTTTCACATTAAACAATTGCTCTTCCAACTTCCAAGATAAAACATGTCTCAATCATGTGTGTCT
CTTACACAAGAGTCTCTATGGTCTCAAACAGGCCCCTCGCGCTTGGTTTGAAAGCTTTACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTAGCGCTGATCCTTCAT
TATTCATTCGATCAGTCGGATCTTCTCTCACTTACTTACTTTTGTATGTAGATGACATCATTGTCACTGGACCTGACTATTCATACATTTTTGTTCTTAAAAACCAATTG
GCCCTAGGATTCAAAATATCCGACCTTGGTCCTTTAAAGTACATTCTTGATCTCGAAATCCAATCCTCCATCGATGGCGAGCTAAATATCTCAATAATCTCCTCCACACA
TCGGGAATGA
Protein sequenceShow/hide protein sequence
MLCKLEQNQVFLSQRPFTLNNCSSNFQDKTCLNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVASSADPSLFIRSVGSSLTYLLLYVDDIIVTGPDYSYIFVLKNQL
ALGFKISDLGPLKYILDLEIQSSIDGELNISIISSTHRE