; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0028511 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0028511
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
Genome locationCMiso1.1chr01:29843255..29844070
RNA-Seq ExpressionCmc01g0028511
SyntenyCmc01g0028511
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]5.2e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

KAA0031941.1 Beta-galactosidase [Cucumis melo var. makuwa]5.2e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]5.2e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]5.2e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]5.2e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

TrEMBL top hitse value%identityAlignment
A0A5A7SM64 Beta-galactosidase2.5e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

A0A5A7V0Y9 Beta-galactosidase2.5e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

A0A5A7VLQ7 Beta-galactosidase2.5e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

A0A5D3BJK7 Beta-galactosidase2.5e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

A0A5D3C4T4 Beta-galactosidase2.5e-13487.5Show/hide
Query:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN
        +SSLSCDVCI+AKQHRVSFPSQ YKPTQPF LIHSDVWGPSK+TTS  KRWFVTFI DHT +TW+YLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDN
Subjt:  MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDN

Query:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV
        GR+FQNHNLSE LASKGIVHQT CA TPQ   +A RKNR LVEVARSLMLSTSL SYLWGDAILTAAHLINRM SRILHLQTPLDCLKESYPSTR V EV
Subjt:  GRKFQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG
        PLRV+GCTAYVHNF PNQTKFT RAQA VFVGYP HQHGYKCFHPPSRKYFVTMDVTF ENRPYFPVSHLQG
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQG

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.2e-3135.38Show/hide
Query:  CDVCIQAKQHRVSFPSQLYKPT---QPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGR
        C+ C+  KQ R+ F  QL   T   +P  ++HSDV GP    T   K +FV F+   TH    YLI  KS+V S+FQ+F    E  F+ K+  L  DNGR
Subjt:  CDVCIQAKQHRVSFPSQLYKPT---QPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGR

Query:  KFQNHNLSESLASKGIVHQTLCADTPQL---ANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRIL--HLQTPLDCLKESYPSTRFVFEV
        ++ ++ + +    KGI +      TPQL   + R  R + E AR+++    L    WG+A+LTA +LINR+ SR L    +TP +      P  +     
Subjt:  KFQNHNLSESLASKGIVHQTLCADTPQL---ANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRIL--HLQTPLDCLKESYPSTRFVFEV

Query:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYE
         LRV+G T YVH     Q KF  ++   +FVGY    +G+K +   + K+ V  DV   E
Subjt:  PLRVYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-3734.38Show/hide
Query:  CDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGRKFQ
        CD C+  KQHRVSF +   +      L++SDV GP +I +    ++FVTFI D +   W+Y++  K +V  +FQ F+  +E +   K+  LRSDNG ++ 
Subjt:  CDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGRKFQ

Query:  NHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEVPLRVY
        +    E  +S GI H+     TPQ   +A R NR +VE  RS++    L    WG+A+ TA +LINR  S  L  + P     E   + + V    L+V+
Subjt:  NHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEVPLRVY

Query:  GCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYEN
        GC A+ H     +TK   ++   +F+GY   + GY+ + P  +K   + DV F E+
Subjt:  GCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYEN

Q12491 Transposon Ty2-B Gag-Pol polyprotein1.2e-1126.67Show/hide
Query:  SSLSCDVCIQAK--QHRVSFPSQL--YKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVS--SIFQNFYHTIETQFHTKIAI
        S+  C  C+  K  +HR    S+L   +  +PF  +H+D++GP          +F++F  + T   W+Y + D+ E S  ++F +    I+ QF+ ++ +
Subjt:  SSLSCDVCIQAK--QHRVSFPSQL--YKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVS--SIFQNFYHTIETQFHTKIAI

Query:  LRSDNGRKFQNHNLSESLASKGIVH-QTLCADTPQ--LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSS
        ++ D G ++ N  L +   ++GI    T  AD+    +A R NR L+   R+L+  + L ++LW  A+  +  + N + S
Subjt:  LRSDNGRKFQNHNLSESLASKGIVH-QTLCADTPQ--LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.7e-3133.46Show/hide
Query:  LSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGRK
        LSC  C+  K ++V F       T+P   I+SDVW  S I +    R++V F+   T  TW+Y +  KS+V   F  F + +E +F T+I    SDNG +
Subjt:  LSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGRK

Query:  FQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEVPLR
        F    L E  +  GI H T    TP+   L+ RK+R +VE   +L+   S+    W  A   A +LINR+ + +L L++P   L  + P+        LR
Subjt:  FQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEVPLR

Query:  VYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSH
        V+GC  Y      NQ K   +++  VF+GY   Q  Y C H  + + +++  V F EN   FP S+
Subjt:  VYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSH

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.2e-3033.21Show/hide
Query:  LSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGRK
        LSC  C   K H+V F +     ++P   I+SDVW  S I +    R++V F+   T  TW+Y +  KS+V   F  F   +E +F T+I  L SDNG +
Subjt:  LSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGRK

Query:  FQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEVPLR
        F    L + L+  GI H T    TP+   L+ RK+R +VE+  +L+   S+    W  A   A +LINR+ + +L LQ+P   L    P+        L+
Subjt:  FQNHNLSESLASKGIVHQTLCADTPQ---LANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEVPLR

Query:  VYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVS
        V+GC  Y      N+ K   +++   F+GY   Q  Y C H P+ + + +  V F E    FP S
Subjt:  VYGCTAYVHNFSPNQTKFTYRAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTCTATCTTGTGATGTGTGTATCCAAGCTAAACAACATCGGGTCTCTTTTCCCTCACAACTATATAAACCTACACAACCATTTACCCTCATCCATAGTGATGT
TTGGGGTCCTTCCAAGATCACCACCTCATTAAGAAAACGATGGTTTGTAACTTTTATCTATGACCATACTCACATTACCTGGATCTACCTTATCACAGATAAATCCGAGG
TTTCATCCATTTTCCAAAACTTCTATCATACTATTGAAACACAATTCCATACAAAAATTGCAATTCTTCGGAGTGATAATGGTCGGAAATTCCAAAACCATAACCTTAGT
GAATCTCTAGCCTCCAAGGGGATTGTTCACCAAACCTTGTGTGCCGACACTCCTCAACTGGCTAATCGAAAAAACCGTCAGCTTGTGGAAGTAGCCCGTTCCCTTATGCT
TTCCACTTCCCTTTCATCATACCTGTGGGGAGATGCAATTCTTACAGCTGCTCACTTAATCAATCGAATGTCTTCTCGTATCCTCCACCTTCAGACTCCCTTAGATTGTC
TTAAGGAGTCTTACCCTTCTACTCGTTTTGTTTTTGAGGTTCCTCTTCGTGTATATGGGTGTACCGCTTATGTCCATAATTTTAGCCCTAATCAGACCAAATTTACCTAT
CGGGCTCAGGCTTATGTGTTTGTTGGGTATCCCTTTCACCAGCATGGTTATAAATGTTTTCACCCGCCGTCTAGGAAATACTTTGTCACTATGGATGTTACTTTCTATGA
GAACCGACCCTACTTTCCCGTTAGCCATCTTCAGGGGAGAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTCTATCTTGTGATGTGTGTATCCAAGCTAAACAACATCGGGTCTCTTTTCCCTCACAACTATATAAACCTACACAACCATTTACCCTCATCCATAGTGATGT
TTGGGGTCCTTCCAAGATCACCACCTCATTAAGAAAACGATGGTTTGTAACTTTTATCTATGACCATACTCACATTACCTGGATCTACCTTATCACAGATAAATCCGAGG
TTTCATCCATTTTCCAAAACTTCTATCATACTATTGAAACACAATTCCATACAAAAATTGCAATTCTTCGGAGTGATAATGGTCGGAAATTCCAAAACCATAACCTTAGT
GAATCTCTAGCCTCCAAGGGGATTGTTCACCAAACCTTGTGTGCCGACACTCCTCAACTGGCTAATCGAAAAAACCGTCAGCTTGTGGAAGTAGCCCGTTCCCTTATGCT
TTCCACTTCCCTTTCATCATACCTGTGGGGAGATGCAATTCTTACAGCTGCTCACTTAATCAATCGAATGTCTTCTCGTATCCTCCACCTTCAGACTCCCTTAGATTGTC
TTAAGGAGTCTTACCCTTCTACTCGTTTTGTTTTTGAGGTTCCTCTTCGTGTATATGGGTGTACCGCTTATGTCCATAATTTTAGCCCTAATCAGACCAAATTTACCTAT
CGGGCTCAGGCTTATGTGTTTGTTGGGTATCCCTTTCACCAGCATGGTTATAAATGTTTTCACCCGCCGTCTAGGAAATACTTTGTCACTATGGATGTTACTTTCTATGA
GAACCGACCCTACTTTCCCGTTAGCCATCTTCAGGGGAGAGTGTGA
Protein sequenceShow/hide protein sequence
MSSLSCDVCIQAKQHRVSFPSQLYKPTQPFTLIHSDVWGPSKITTSLRKRWFVTFIYDHTHITWIYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGRKFQNHNLS
ESLASKGIVHQTLCADTPQLANRKNRQLVEVARSLMLSTSLSSYLWGDAILTAAHLINRMSSRILHLQTPLDCLKESYPSTRFVFEVPLRVYGCTAYVHNFSPNQTKFTY
RAQAYVFVGYPFHQHGYKCFHPPSRKYFVTMDVTFYENRPYFPVSHLQGRV