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Cmc01g0029341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0029341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCMiso1.1chr01:30761595..30767817
RNA-Seq ExpressionCmc01g0029341
SyntenyCmc01g0029341
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.3e-3274.42Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P KWR WI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
KAA0039966.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.6e-3273.26Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P +WR+WI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-3274.42Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P +WRRWI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
TYK21642.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.6e-3273.26Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P +WR+WI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]4.3e-3274.42Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P KWR WI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein2.1e-3274.42Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P KWR WI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
A0A5A7TCY9 LINE-1 retrotransposable element ORF2 protein2.7e-3273.26Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P +WR+WI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein1.2e-3274.42Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P +WRRWI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein2.7e-3273.26Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P +WR+WI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein2.1e-3274.42Show/hide
Query:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
        +D I  AN++ID+W+VKKI+GFV KLDIEKAFDK+NWRFIDFMLMKKG+P KWR WI +CI  VQYS+IING PRGK QP+RGIRQ
Subjt:  MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases2.4e-0437.04Show/hide
Query:  DVIHFANKSIDFWKVKK-IEGF-VFKLDIEKAFDKINWRFIDFMLMKKGFPHKW
        D I F  +++   + KK ++G+ + KLD+EKA+D+I W +++  L+  GFP  W
Subjt:  DVIHFANKSIDFWKVKK-IEGF-VFKLDIEKAFDKINWRFIDFMLMKKGFPHKW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCATTCATTTTGCAAATAAGTCCATTGATTTTTGGAAAGTAAAAAAAATTGAAGGTTTTGTGTTTAAGCTGGATATTGAGAAGGCCTTTGACAAAATAAATTG
GCGCTTCATTGATTTTATGCTCATGAAAAAGGGCTTCCCTCACAAATGGAGAAGATGGATAAATTCTTGCATTAGATGTGTACAATATTCAGTCATTATCAATGGACACC
CAAGAGGAAAAACTCAACCCACTCGTGGTATTCGCCAAGTACTGGAAAGTTACCTGTAA
mRNA sequenceShow/hide mRNA sequence
CTCCCCAACATTCATTCAAGGCAGGTAGATTATGGATGTCATTCATTTTGCAAATAAGTCCATTGATTTTTGGAAAGTAAAAAAAATTGAAGGTTTTGTGTTTAAGCTGG
ATATTGAGAAGGCCTTTGACAAAATAAATTGGCGCTTCATTGATTTTATGCTCATGAAAAAGGGCTTCCCTCACAAATGGAGAAGATGGATAAATTCTTGCATTAGATGT
GTACAATATTCAGTCATTATCAATGGACACCCAAGAGGAAAAACTCAACCCACTCGTGGTATTCGCCAAGTACTGGAAAGTTACCTGTAATGGCAAGAACGACACCGCCG
AGAGAGATCCAAGCATCCTTTTTGTTTCTTTTGAAGTAGTCAAAAATGTATTTTGGATTAACAGCTTTGATGACAGAAGGATCAAATTTCAAAAAATTGTAGAAGCCAAT
GCCACCAATTAGTGCAAACCAAATGCAAATAATTGGAGCAAAGGAATATCCAACTTTATGGGTTCCAAATCTTTGTACCATGAATAGACAAACCAAGATTGCTGCTGATA
TCCAAACTATTTTGTCTGTCCAAAAGAAAGAAAGAAAGAAAGAAAAAAAGACTG
Protein sequenceShow/hide protein sequence
MDVIHFANKSIDFWKVKKIEGFVFKLDIEKAFDKINWRFIDFMLMKKGFPHKWRRWINSCIRCVQYSVIINGHPRGKTQPTRGIRQVLESYL