; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0029471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0029471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr01:30801008..30801989
RNA-Seq ExpressionCmc01g0029471
SyntenyCmc01g0029471
Gene Ontology termsGO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0050896 - response to stimulus (biological process)
GO:1901564 - organonitrogen compound metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]3.7e-3863.29Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQT-----TEKGA
        MSLKEYFLKIQQCVDALASINKP+S+DD ILYILAGLG++YQS+IS+ISARTD  SVQ+ MSLLLTQESQ ESK+ SE +LP+VN+ T T      EK +
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQT-----TEKGA

Query:  ESYIRTSQNN--YHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWY
        E   R   NN  Y   +S      R  GRSN GGRGNR+K QCQIC+K GH AD  ++
Subjt:  ESYIRTSQNN--YHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWY
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.3e-7974.89Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
        M LKEYFLKI QCVDALASINKPVSSDD ILYILAGLGSDYQSMISVISARTD  SVQE+MSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR

Query:  TSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSA---------------------------------------------DSNWYPDSG
        T+QNNYHNNHSYNQRGGRGNGRSN G RGNRNKPQCQIC KLG+SA                                             DSNWYPDSG
Subjt:  TSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSA---------------------------------------------DSNWYPDSG

Query:  ATNHLTHSLSNLSTGSEYGGGNQIYTANGSG
        ATNHLTHSLSNLS GSEYGGGNQIY ANGSG
Subjt:  ATNHLTHSLSNLSTGSEYGGGNQIYTANGSG
KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.0e-4388.5Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
        MSLKEYFLKIQQCVDALASINKPVSSDD ILYIL GLG DYQSMIS+ISARTD  S+QE+MSLLLTQESQNESKLISETALP V IVTQTTEKGAESYIR
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR

Query:  TSQNNYHNNHSYN
         SQNNYHN+H YN
Subjt:  TSQNNYHNNHSYN
KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-5799.17Show/hide
Query:  QESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSGATNHLTHSLSN
        +ESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSGATNHLTHSLSN
Subjt:  QESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSGATNHLTHSLSN

Query:  LSTGSEYGGGNQIYTANGSG
        LSTGSEYGGGNQIYTANGSG
Subjt:  LSTGSEYGGGNQIYTANGSG
TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.3e-7974.89Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
        M LKEYFLKI QCVDALASINKPVSSDD ILYILAGLGSDYQSMISVISARTD  SVQE+MSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR

Query:  TSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSA---------------------------------------------DSNWYPDSG
        T+QNNYHNNHSYNQRGGRGNGRSN G RGNRNKPQCQIC KLG+SA                                             DSNWYPDSG
Subjt:  TSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSA---------------------------------------------DSNWYPDSG

Query:  ATNHLTHSLSNLSTGSEYGGGNQIYTANGSG
        ATNHLTHSLSNLS GSEYGGGNQIY ANGSG
Subjt:  ATNHLTHSLSNLSTGSEYGGGNQIYTANGSG
TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-7974.89Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
        M LKEYFLKI QCVDALASINKPVSSDD ILYILAGLGSDYQSMISVISARTD  SVQE+MSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR

Query:  TSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSA---------------------------------------------DSNWYPDSG
        T+QNNYHNNHSYNQRGGRGNGRSN G RGNRNKPQCQIC KLG+SA                                             DSNWYPDSG
Subjt:  TSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSA---------------------------------------------DSNWYPDSG

Query:  ATNHLTHSLSNLSTGSEYGGGNQIYTANGSG
        ATNHLTHSLSNLS GSEYGGGNQIY ANGSG
Subjt:  ATNHLTHSLSNLSTGSEYGGGNQIYTANGSG
A0A5A7UB21 Keratin, type II cytoskeletal 1-like4.8e-4488.5Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
        MSLKEYFLKIQQCVDALASINKPVSSDD ILYIL GLG DYQSMIS+ISARTD  S+QE+MSLLLTQESQNESKLISETALP V IVTQTTEKGAESYIR
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR

Query:  TSQNNYHNNHSYN
         SQNNYHN+H YN
Subjt:  TSQNNYHNNHSYN
A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-7974.89Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
        M LKEYFLKI QCVDALASINKPVSSDD ILYILAGLGSDYQSMISVISARTD  SVQE+MSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIR

Query:  TSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSA---------------------------------------------DSNWYPDSG
        T+QNNYHNNHSYNQRGGRGNGRSN G RGNRNKPQCQIC KLG+SA                                             DSNWYPDSG
Subjt:  TSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSA---------------------------------------------DSNWYPDSG

Query:  ATNHLTHSLSNLSTGSEYGGGNQIYTANGSG
        ATNHLTHSLSNLS GSEYGGGNQIY ANGSG
Subjt:  ATNHLTHSLSNLSTGSEYGGGNQIYTANGSG
A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon1.8e-3863.29Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQT-----TEKGA
        MSLKEYFLKIQQCVDALASINKP+S+DD ILYILAGLG++YQS+IS+ISARTD  SVQ+ MSLLLTQESQ ESK+ SE +LP+VN+ T T      EK +
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQT-----TEKGA

Query:  ESYIRTSQNN--YHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWY
        E   R   NN  Y   +S      R  GRSN GGRGNR+K QCQIC+K GH AD  ++
Subjt:  ESYIRTSQNN--YHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWY
A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-5799.17Show/hide
Query:  QESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSGATNHLTHSLSN
        +ESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSGATNHLTHSLSN
Subjt:  QESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSGATNHLTHSLSN

Query:  LSTGSEYGGGNQIYTANGSG
        LSTGSEYGGGNQIYTANGSG
Subjt:  LSTGSEYGGGNQIYTANGSG
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.6e-0725.54Show/hide
Query:  SLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRT
        ++ +Y   +    D LA + KP+  D+++  +L  L  +Y+ +I  I+A+    ++ EI   LL  ES+  + + S T +P    +T        +    
Subjt:  SLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRT

Query:  SQNNYHNNHSYNQRGGRGNGR------SNSGGRGNRNKP---QCQICTKLGHSA--------------------------------------DSNWYPDS
        + NN + N+ Y+ R    N +      +N     N++KP   +CQIC   GHSA                                       +NW  DS
Subjt:  SQNNYHNNHSYNQRGGRGNGR------SNSGGRGNRNKP---QCQICTKLGHSA--------------------------------------DSNWYPDS

Query:  GATNHLTHSLSNLSTGSEYGGGNQIYTANGS
        GAT+H+T   +NLS    Y GG+ +  A+GS
Subjt:  GATNHLTHSLSNLSTGSEYGGGNQIYTANGS
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.7e-1028.7Show/hide
Query:  DALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQ
        D LA + KP+  D+++  +L  L  DY+ +I  I+A+    S+ EI   L+ +ES+  +   +E    + N+VT        +    +QNN  +N +YN 
Subjt:  DALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQ

Query:  RGGRGNG--RSNSGGRGNRNKP-----QCQICTKLGHSAD--------------------------------------SNWYPDSGATNHLTHSLSNLST
           R N    S+SG R +  +P     +CQIC+  GHSA                                       +NW  DSGAT+H+T   +NLS 
Subjt:  RGGRGNG--RSNSGGRGNRNKP-----QCQICTKLGHSAD--------------------------------------SNWYPDSGATNHLTHSLSNLST

Query:  GSEYGGGNQIYTANGS
           Y GG+ +  A+GS
Subjt:  GSEYGGGNQIYTANGS
Arabidopsis top hitse value%identityAlignment
AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)3.6e-0730.54Show/hide
Query:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQ--NESK-LISETALPSVNIVTQTTEKGAES
        +S+ EY  K++   D L +++ P+S    ++++L GL   Y  +++VI  ++ F S  E  S+LL +ES+  N+SK  +S T  PS++ V  T  +  E 
Subjt:  MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQ--NESK-LISETALPSVNIVTQTTEKGAES

Query:  YIRTSQNNYHNNHS---------YNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSG
        Y       YHNN+S          N+ GG  +GR N+      N+P   I    G       YP  G
Subjt:  YIRTSQNNYHNNHS---------YNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTAAAAGAATACTTTCTCAAAATACAGCAGTGTGTTGATGCCTTAGCTTCAATTAATAAACCAGTTTCATCTGATGATCGTATTTTGTACATATTGGCTGGTTT
AGGATCTGATTATCAATCCATGATATCTGTTATTTCCGCCAGAACTGACTTTTCTTCTGTACAAGAAATTATGTCTTTATTACTTACCCAGGAATCTCAAAATGAGAGCA
AATTAATCAGTGAAACTGCTCTACCTTCTGTTAACATTGTCACCCAAACAACTGAAAAAGGAGCAGAATCTTACATAAGGACCAGCCAAAACAACTATCACAACAATCAT
TCCTACAATCAAAGGGGTGGTCGTGGAAATGGAAGATCAAACAGTGGAGGAAGAGGAAATCGTAATAAACCACAATGCCAAATCTGTACAAAGCTTGGACATAGTGCTGA
CAGCAATTGGTATCCTGATTCGGGAGCTACAAATCATTTAACTCATAGCTTGAGCAACCTATCTACTGGATCTGAGTACGGAGGAGGAAATCAAATATATACAGCAAATG
GGTCAGGATCTGGATAA
mRNA sequenceShow/hide mRNA sequence
TGCTTCATTGCAAATCTGCAAAATAAATTTGGGAAACTCTTCAATGTATTTTCTCTTCCCGTTACTTGGCACAAGCTGTGCAATTCAAAAACAAACTTCACAATATAAAG
AAAGGATCCATGTCATTAAAAGAATACTTTCTCAAAATACAGCAGTGTGTTGATGCCTTAGCTTCAATTAATAAACCAGTTTCATCTGATGATCGTATTTTGTACATATT
GGCTGGTTTAGGATCTGATTATCAATCCATGATATCTGTTATTTCCGCCAGAACTGACTTTTCTTCTGTACAAGAAATTATGTCTTTATTACTTACCCAGGAATCTCAAA
ATGAGAGCAAATTAATCAGTGAAACTGCTCTACCTTCTGTTAACATTGTCACCCAAACAACTGAAAAAGGAGCAGAATCTTACATAAGGACCAGCCAAAACAACTATCAC
AACAATCATTCCTACAATCAAAGGGGTGGTCGTGGAAATGGAAGATCAAACAGTGGAGGAAGAGGAAATCGTAATAAACCACAATGCCAAATCTGTACAAAGCTTGGACA
TAGTGCTGACAGCAATTGGTATCCTGATTCGGGAGCTACAAATCATTTAACTCATAGCTTGAGCAACCTATCTACTGGATCTGAGTACGGAGGAGGAAATCAAATATATA
CAGCAAATGGGTCAGGATCTGGATAATGGCCAAGTACTTCTTCAAGGACTACTCAATGATGGGCTCTACAAATTTACCATTCAACCATCACATAAAAGACTTCACAATTC
TGACCCCAACACCAAGTCTGTTTTCAATAC
Protein sequenceShow/hide protein sequence
MSLKEYFLKIQQCVDALASINKPVSSDDRILYILAGLGSDYQSMISVISARTDFSSVQEIMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTSQNNYHNNH
SYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYTANGSGSG