CuGenDBv2

Gene ID	Cmc01g0030231
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Genome location	CMiso1.1chr01:31272999..31275558
RNA-Seq Expression	Cmc01g0030231
Synteny	Cmc01g0030231
Gene Ontology terms	NA
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

6.0e-210

95.1

Show/hide

Query:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTS-----------------GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV
        MREEKSFHEFSHWIKFFRGASSKFPPFSRTS                 GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYF+SKGNV
Subjt:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTS-----------------GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV

Query:  SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS
        SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEM SPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS
Subjt:  SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS

Query:  KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD
        KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD
Subjt:  KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD

Query:  EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
        EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
Subjt:  EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]

9.3e-211

98.65

Show/hide

Query:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ
        MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYF+SKGNVSFNS  R PWRFMRNIQ
Subjt:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ

Query:  PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD
        PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEM SPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD
Subjt:  PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD

Query:  YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP
        YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP
Subjt:  YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP

Query:  VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
        VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
Subjt:  VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

XP_004136166.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucumis sativus]

2.7e-170

92.79

Show/hide

Query:  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIL
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIL

Query:  LSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

7.1e-211

95.62

Show/hide

Query:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTS-----------------GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV
        MREEKSFHEFSHWIKFFRGASSKFPPFSRTS                 GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV
Subjt:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTS-----------------GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV

Query:  SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS
        SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS
Subjt:  SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS

Query:  KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD
        KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD
Subjt:  KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD

Query:  EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
        EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
Subjt:  EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

4.0e-214

100

Show/hide

Query:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ
        MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ
Subjt:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ

Query:  PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD
        PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD
Subjt:  PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD

Query:  YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP
        YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP
Subjt:  YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP

Query:  VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
        VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
Subjt:  VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

1.3e-170

92.79

Show/hide

Query:  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIL
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIL

Query:  LSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

2.0e-214

100

Show/hide

Query:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ
        MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ
Subjt:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ

Query:  PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD
        PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD
Subjt:  PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD

Query:  YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP
        YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP
Subjt:  YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP

Query:  VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
        VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
Subjt:  VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

3.5e-211

95.62

Show/hide

Query:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTS-----------------GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV
        MREEKSFHEFSHWIKFFRGASSKFPPFSRTS                 GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV
Subjt:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTS-----------------GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV

Query:  SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS
        SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS
Subjt:  SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS

Query:  KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD
        KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD
Subjt:  KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD

Query:  EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
        EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
Subjt:  EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

A0A5A7VN29 Uncharacterized protein

2.9e-210

95.1

Show/hide

Query:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTS-----------------GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV
        MREEKSFHEFSHWIKFFRGASSKFPPFSRTS                 GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYF+SKGNV
Subjt:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTS-----------------GTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNV

Query:  SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS
        SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEM SPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS
Subjt:  SFNSHFRVPWRFMRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVS

Query:  KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD
        KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD
Subjt:  KSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSD

Query:  EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
        EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
Subjt:  EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

A0A5D3D2J4 Uncharacterized protein

4.5e-211

98.65

Show/hide

Query:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ
        MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYF+SKGNVSFNS  R PWRFMRNIQ
Subjt:  MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQ

Query:  PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD
        PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEM SPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD
Subjt:  PSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKD

Query:  YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP
        YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP
Subjt:  YPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPP

Query:  VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
        VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS
Subjt:  VDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.8e-55

53.7

Show/hide

Query:  MSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPE
        + SPWEGAV+Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL   T D       TPV +SVDVTR+  +LRLDGIV+TVITL C+RC EPAP+
Subjt:  MSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPE

Query:  CIFSNFSILLSEEPI-EEPDVINMGIISGQDIFKTDNGNSD----EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGI
         IF+NFS+LL+E+P+ EEPD   +G I  +D    D G +      D ++ +D DD+L+FP  DKEIDISK+IRD++HLEIT++ +CNP CKG+CL CG 
Subjt:  CIFSNFSILLSEEPI-EEPDVINMGIISGQDIFKTDNGNSD----EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGI

Query:  NLN-TGSCNCSKQAVK
        NLN T SC C  + V+
Subjt:  NLN-TGSCNCSKQAVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

3.5e-83

60.15

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Query:  IKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   +   +  + +S  E ++I  DW DQE +IE+  SPWEG+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C RC E   E IFSNFS+LL+EEP+EEPDVI++G   G D  K +  + D++D+  +D +D+L+FPP  KEIDI
Subjt:  QISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDI

Query:  SKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQ
        SK+IRD++HLEIT+  IC+  CKGMCL CG NLN   C+C ++  K   +GPLGNL+ +MQ
Subjt:  SKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

2.5e-84

60.15

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Query:  IKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   +   +  + +S  E ++I  DW DQE +IE+  SPWEG+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C RC E   E IFSNFS+LL+EEP+EEPDVI++G   G D  K +  + D++D+  +D +D+L+FPP  KEIDI
Subjt:  QISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDI

Query:  SKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQ
        SK+IRD++HLEIT+  IC+  CKGMCL CG NLN   C+C ++  K   +GPLGNL+ +MQ
Subjt:  SKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCGAGAGGAAAAGTCCTTCCATGAGTTCAGCCACTGGATAAAATTTTTCCGCGGAGCGTCATCGAAATTCCCACCATTTTCAAGAACCTCAGGGACTGTGTTATTTGT
ATCTACGGAAATTCCTTTACCCACTTTCTGTCCCCATTCGTTTAAGATGCTAGCCACATTTCCCACATCATCCGTAGTTTCATCTTCTCATTCCAAGGAATTTATTAATG
TATTCTACTTCGAATCTAAAGGGAATGTTTCTTTTAATTCACATTTTCGAGTTCCATGGAGATTTATGAGAAATATTCAGCCAAGCTTGGGTGACCCATGTATTAAGATG
AAATCTACTTCCATTAAGTGTGTGAAACCTACGTATCAATCCCTTTTTGAGGACAATTCCATTATTACTGATTGGGGAGATCAAGAAGGGGATATTGAGGAGATGAGCTC
ACCTTGGGAAGGAGCAGTTATCTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGA
AATCTAGAGCATCGACGATGGGTCTACGCGTAACGAAGGATGTGAAAGATTATCCCTTTGGAACACCTGTTCAAATCTCTGTTGATGTCACAAGGAAAGATAAAAAGTTG
AGGCTGGACGGAATAGTTAAAACTGTCATCACCCTGAATTGTTATAGGTGTTGTGAACCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTTTACTAAGCGAAGAACC
AATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGCGGGCAGGATATATTCAAGACTGATAATGGAAATAGTGACGAAGATGATGAAGAGTCGGTAGATTTGGATG
ATCAACTCTATTTTCCTCCTGTGGACAAAGAGATAGATATATCAAAGAACATCAGAGACATCTTGCATCTAGAAATTACTATGAATGTGATATGTAATCCGGGATGCAAA
GGTATGTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAAATTTGAAAAGACGAAT
GCAGAACAATTCTTAA

mRNA sequence

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GTAAAACTTAGTTAGAGGATTAAGTTTGCAATTATTTCTTTAAAGTTTAAGATTAAAATTACAAAAGGCTTATCACAAAATTTGAGATGTAATTTACCTTAAATCTTCGA
TTTATCAAAACAATTTTAATTGATGAAGATAAATTTGAAAATTACGTACTATTTTCCATTACCCATTGATTAAAAACTTTATGCGAGAGGAAAAGTCCTTCCATGAGTTC
AGCCACTGGATAAAATTTTTCCGCGGAGCGTCATCGAAATTCCCACCATTTTCAAGAACCTCAGGGACTGTGTTATTTGTATCTACGGAAATTCCTTTACCCACTTTCTG
TCCCCATTCGTTTAAGATGCTAGCCACATTTCCCACATCATCCGTAGTTTCATCTTCTCATTCCAAGGAATTTATTAATGTATTCTACTTCGAATCTAAAGGGAATGTTT
CTTTTAATTCACATTTTCGAGTTCCATGGAGATTTATGAGAAATATTCAGCCAAGCTTGGGTGACCCATGTATTAAGATGAAATCTACTTCCATTAAGTGTGTGAAACCT
ACGTATCAATCCCTTTTTGAGGACAATTCCATTATTACTGATTGGGGAGATCAAGAAGGGGATATTGAGGAGATGAGCTCACCTTGGGAAGGAGCAGTTATCTACAAGAG
GAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGACGATGGGTCTACGCG
TAACGAAGGATGTGAAAGATTATCCCTTTGGAACACCTGTTCAAATCTCTGTTGATGTCACAAGGAAAGATAAAAAGTTGAGGCTGGACGGAATAGTTAAAACTGTCATC
ACCCTGAATTGTTATAGGTGTTGTGAACCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTTTACTAAGCGAAGAACCAATTGAAGAACCTGATGTCATAAATATGGG
AATCATTAGCGGGCAGGATATATTCAAGACTGATAATGGAAATAGTGACGAAGATGATGAAGAGTCGGTAGATTTGGATGATCAACTCTATTTTCCTCCTGTGGACAAAG
AGATAGATATATCAAAGAACATCAGAGACATCTTGCATCTAGAAATTACTATGAATGTGATATGTAATCCGGGATGCAAAGGTATGTGTCTAAATTGTGGTATAAATTTG
AATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAAATTTGAAAAGACGAATGCAGAACAATTCTTAAGACTTGAATGCAAG
ACCATGTGTTCCTTTTAATCAACCTCTTTCTATCTAAAAATGTGTCTTATCTTGGCTTAGCTCTTTTACAAGTTTACAACCATCCTTTTTATATCTTATTTGCATCTTAC
CCTTTGTTAACTTAGAGCACCTGCAATTAAATTCTGAGAAAATATGTCTATTATTACTCTGCTCATTTGCTTGAAC

Protein sequence

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MREEKSFHEFSHWIKFFRGASSKFPPFSRTSGTVLFVSTEIPLPTFCPHSFKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKM
KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKL
RLDGIVKTVITLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCK
GMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRRMQNNS

Cmc01g0030231 (gene) of Melon (Charmono) v1.1 genome