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Cmc01g0030701 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0030701
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTranscription initiation factor TFIID subunit 13
Genome locationCMiso1.1chr01:31690940..31695872
RNA-Seq ExpressionCmc01g0030701
SyntenyCmc01g0030701
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003195 - Transcription initiation factor IID, subunit 13
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18217.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]6.2e-64100Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_004136002.1 transcription initiation factor TFIID subunit 13 [Cucumis sativus]2.4e-6399.26Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_008451497.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo]6.2e-64100Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]2.0e-6297.78Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]6.9e-6398.52Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

TrEMBL top hitse value%identityAlignment
A0A0A0KB69 Uncharacterized protein1.1e-6399.26Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A1S3BRL0 transcription initiation factor TFIID subunit 133.0e-64100Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 133.0e-64100Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A5D3D2Q2 Transcription initiation factor TFIID subunit 133.0e-64100Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 139.7e-6397.78Show/hide
Query:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 133.8e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q148M7 Transcription initiation factor TFIID subunit 133.8e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q15543 Transcription initiation factor TFIID subunit 133.8e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q5R9W6 Transcription initiation factor TFIID subunit 133.8e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q6NQH4 Transcription initiation factor TFIID subunit 132.6e-3667.21Show/hide
Query:  SSAGSSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTE
        ++A SSSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  E
Subjt:  SSAGSSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTE

Query:  LLSMNEELKQARRAFEIDEDKL
        LL+M EELKQAR+AF++DE +L
Subjt:  LLSMNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 131.8e-3767.21Show/hide
Query:  SSAGSSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTE
        ++A SSSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  E
Subjt:  SSAGSSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTE

Query:  LLSMNEELKQARRAFEIDEDKL
        LL+M EELKQAR+AF++DE +L
Subjt:  LLSMNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATTCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTG
CAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAATCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTGTATAAA
GCCCAGGAAATTGGATCAAAGAGAGGAAAGCTATCAGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCG
ATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAG
mRNA sequenceShow/hide mRNA sequence
CTTTACTCACGAAAATTCCCTCTCTCGACTGCCGAACCAAACCCTCGCCCCTCTCACGATCGACGACGCCATACCTTCCCTCTCTCGGCTGCCGTTCAACCGACG
ACGACGTCACTTCAACATCTAAGGAGAAGCTACTGCTGACTCTTTCGTAGTCACTCCCGGCCGCCGTTGTTTATTTCAGACGGCTTTCTCTCGGCTTCATTTGAG
CTCTCATCGTCGTCATTTCCGATTATTTTCGTTTTCATTATTGTGGGAAGATAGTAAAGATGAATAATTCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGAT
CGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAG
AATCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTGTATAAAGCCCAGGAAATTGGATCAAAGAGAGGAAAGCTATCAGTGGAAGACT
TTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATG
AAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATATTTTGGAGGTCATATGTCATTGTTGCTGTACAGACAAAGTAT
GTCTCATTATGGTTCCTTGCGATATTAAAAGTCACGCGACGGGTCTTAGAACTCTCTGTCTTTGTCATCCTTTTTAGACAGGGCAAAGCAAAGCAATTAGCGTTA
ACAAGGTATATTTTGTTTTTTTCTGCTTAATGGCAATTAATGTACCTGCTTAATGGCAACTTATACGTATAAAGGGTGGGGGCTCCCTATTGTACACGCACCCCT
TTTGGAATTAATGAAATGAACGCCTCTTTTAAACGTTTGTAGCCTTAGTATATTGCTTCATTCAATATGTTAAGAGTTTTCGTACTGGGGCCTATCTTGGAGCAA
ACAACTTATGTGGCTATCTAATTGAG
Protein sequenceShow/hide protein sequence
MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLS
MNEELKQARRAFEIDEDKLKKAFEEEDKMD