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Cmc02g0040601 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0040601
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRep-A_N domain-containing protein
Genome locationCMiso1.1chr02:2434785..2438611
RNA-Seq ExpressionCmc02g0040601
SyntenyCmc02g0040601
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD44309.1 TPA_asm: hypothetical protein HUJ06_002539 [Nelumbo nucifera]5.6e-2261.4Show/hide
Query:  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESG--LWVAW
        MTAP I  +T PPA +LSKKF  EG+ P PAASATSGIT++A RAAAV P TAFS +DDRT +        A++ L DLK G GLKKAS   G  LW+A 
Subjt:  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESG--LWVAW

Query:  VNGKAIETAEVEAI
        VNG AIETAEV+AI
Subjt:  VNGKAIETAEVEAI

KAA0055792.1 Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa]1.9e-62100Show/hide
Query:  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVN
        MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVN
Subjt:  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVN

Query:  GKAIETAEVEAIDGMKWMEVKGIEDFVEN
        GKAIETAEVEAIDGMKWMEVKGIEDFVEN
Subjt:  GKAIETAEVEAIDGMKWMEVKGIEDFVEN

KAG6590026.1 hypothetical protein SDJN03_15449, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3375.68Show/hide
Query:  IATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKE---GNGLKKASLESGLWVAWVNGK
        +ATTT PPAA+LSKKFF++G+TP PAASATSGITIDA RAAAV P  AFSF DDRTAT LPL++GAAAM LRDL+E   GNGLKKA L+S LWVA VNG+
Subjt:  IATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKE---GNGLKKASLESGLWVAWVNGK

Query:  AIETAEVEAID
        A ET EVEAID
Subjt:  AIETAEVEAID

RXH74777.1 hypothetical protein DVH24_029498 [Malus domestica]5.8e-1961.74Show/hide
Query:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAA-AMGLRDLK-EGNGLKKASLESGL--WVA
        TAP I T T PPAAILSKKFF EG+TP+ AASATSGITI+A  AAAVIP TAFSFN+  T + LPL+  AA A     L   G+GLKK   E  +  WVA
Subjt:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAA-AMGLRDLK-EGNGLKKASLESGL--WVA

Query:  WVNGKAIETAEVEAI
         VNG AI TA V+AI
Subjt:  WVNGKAIETAEVEAI

RXI06133.1 hypothetical protein DVH24_018175 [Malus domestica]2.9e-1859.29Show/hide
Query:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGL--WVAWV
        TAP I TTT PPAA+LSKKF  EG+TP+ AASATSGITI+A  AAAVIP TAFSF +  T + LPL+  AA     +   G GL K S E  +  WVA V
Subjt:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGL--WVAWV

Query:  NGKAIETAEVEAI
        NG AI TA V AI
Subjt:  NGKAIETAEVEAI

TrEMBL top hitse value%identityAlignment
A0A218WXK4 Rep-A_N domain-containing protein1.3e-1656.9Show/hide
Query:  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGL-RDLKEGNGLKKASLESGLWV---
        +TAP I  +T PPA IL +KF  EGDTPDPAASATSGITI+A RAAAV P  AFS  +  T+   P +  A   GL  D   G+GLKK S  +G      
Subjt:  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGL-RDLKEGNGLKKASLESGLWV---

Query:  AWVNGKAIETAEVEAI
        A VNG AIETAEVEAI
Subjt:  AWVNGKAIETAEVEAI

A0A498HYV1 Rep-A_N domain-containing protein2.8e-1961.74Show/hide
Query:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAA-AMGLRDLK-EGNGLKKASLESGL--WVA
        TAP I T T PPAAILSKKFF EG+TP+ AASATSGITI+A  AAAVIP TAFSFN+  T + LPL+  AA A     L   G+GLKK   E  +  WVA
Subjt:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAA-AMGLRDLK-EGNGLKKASLESGL--WVA

Query:  WVNGKAIETAEVEAI
         VNG AI TA V+AI
Subjt:  WVNGKAIETAEVEAI

A0A498KLC5 Rep-A_N domain-containing protein1.4e-1859.29Show/hide
Query:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGL--WVAWV
        TAP I TTT PPAA+LSKKF  EG+TP+ AASATSGITI+A  AAAVIP TAFSF +  T + LPL+  AA     +   G GL K S E  +  WVA V
Subjt:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGL--WVAWV

Query:  NGKAIETAEVEAI
        NG AI TA V AI
Subjt:  NGKAIETAEVEAI

A0A5A7UIW0 Replication protein A 70 kDa DNA-binding subunit9.3e-63100Show/hide
Query:  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVN
        MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVN
Subjt:  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVN

Query:  GKAIETAEVEAIDGMKWMEVKGIEDFVEN
        GKAIETAEVEAIDGMKWMEVKGIEDFVEN
Subjt:  GKAIETAEVEAIDGMKWMEVKGIEDFVEN

A0A7J7G758 Replication protein A subunit5.5e-1550.89Show/hide
Query:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKAS-LESGLWVAWVN
        T P +  +T PPA +LSKKF  EG+TPDPAASATSGIT++A  AAAV P T FSF +  T+    +        L  L  G+GLKKA+ L +  WVA V+
Subjt:  TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKAS-LESGLWVAWVN

Query:  GKAIETAEVEAI
        G A + AEVEA+
Subjt:  GKAIETAEVEAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGG
GATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGA
TGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAA
GCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA
mRNA sequenceShow/hide mRNA sequence
TGTTTCCTAATTCCTATAAGATCCCAATTTTCGCCAAAGAACCCTACGGCACCCAAATTAGGGTTTCAGAAGTTCAAGAACATTCCTTCCTCCAACTTCATGATGAACGA
TGCTCTCATTTCTCCTACCGTTCTTTAGTTCTTAATCTTTATTCATAGTTCAATTGTTTGTATCTTTTTTAATTTCATGATTTTGAGTTATTACAGTGATCTGTAGACGT
TAATTCTTCGTCTTTGGTTTGCTCTGATGTTGCTGATTCGTCAATTACAGTTGTTGTAAAGCTTGATTCCGTTGGTTATCTTGTATCAACTCTGTGTCTGAGGATGACGA
AATGAAGTTCCTCCATACCATTATTCTTTGTGAAACTGTTTTGACTTTGTAACACAAGGAGGATACAAATTTCTTCATCCTTGTCTGACTTTTTACTACATCAAGTGTAC
AGGTGATTGATAACAAACATGGTTATCTTTCTCATTGATTAGATCGATCATTCTCTTTTTCAACGACGAGGCAATATTTTTTCTGTCATCTATAAAGCAAATAGGATATT
TCTATACCAAATTTGTGTCGGAAGATGACGATATGAATTAGGCAATCCTCTATTCATTTTGAAGACCTGGAAATTCCCTCCATTTTTTCAAGTAGAGGTTGTCGACACAT
TTCAGATGTCTCTGTTTGAAAATTTGATTATTGCTACTTTGAGTTTTTTTCTCTTTTTTGAATGAGTGAATAATCATGTTTTGACTAGTTGATATGTTCCAGTCATCCAT
AAAGCAAATAGGTTGTTTTGTATACCAATTTTTGTGTCGGAAGATGACAACATCCACTGTGATGCTTCTACATTTTGAAAGGTTGTACCTCTTTCTAGTAGAAGTTGTCA
CAAATATATTTCTTCAAATGCCTATGTCTCCACCCTTGATGTTATTTTCTTACCAAGTTTGTTAGTTGCTTTATTTGGAAATTGTCAGAAGTGAACTAAAAAGCTTTCAT
CTTTCACAATTAGCTCCTTTTGGAGTATCCGTGGGAATAGTTTTTCTTGGTCCTTCTCGGTCAATATTGAAATTTGAATGGAAGTTGACCGTGTACAGGCTCTACTGATT
ATGAATTTCTCATTGTTCCCTACTATGTGGTGGCCTAGAAAAGCGAAACAGATTTCGTGGTGATCGTGCAACATGATGCCTAGTGTGCTAGGAAGCACAGATACTGATTA
TTTAGTAAAAGAAATTTAATATATATCATGCATATAAACATATTACATAACAAGTTCACGTTGGTGAGATGGTTAGGGCTGAGAGGATTGGGGAGTATCGAAGAAGGGAT
GGTGGAGTGTGTGAAGCTTTTTGATTCAATCGGTGTCAGAAACGTTTTTGACATCGGCGGTTTTTCTTAGGTAGTGTACACATGAAAAAAAGAAAAGAAAATAATGGCAT
GCATATGTTGAATGATGGGAGGTTGGAGGTGGGCGGAGTTCACTTTGTTGAATAAGATGGCCAGTGATGAACATGGTAAGTTGCAGTTTGTTGTGTCTCTATAACGATCT
TGCTCTAAATGGTTCTGTTTCATAGATTGTACAACTACGGCCCTTGTGTTTCAGTCTTGGTGACTTGGCTTTCTCTGTTATTTTTTCGATTTCTCATGGATTTTTTTTTA
AAAAAAAAATTCTGCAAACAAGTTGTTTAATGACCATCTCTTTGTACATGTTTGAACTGGAATTATTGATCGATGATAAAAGGAAAATGTTTGTAACAAATCCTTATTCT
CTCAAGCCACAGTTCTTCCTTGTCTTATGGACTCGAGTTTATGTCTAGATACCACAATCACAAGATATTAGATATTAAACTTAAGTTATTGTGATGTTTATATGCTTTCA
TGGGTTGAAAAGATGCCTAACTAGTCCCTAAATCGTTCTATAACCTATCAATATTCTTGTTTGTTGAGCCATAAAGCAAATTTATAGTCAAATTTAAATCTCCAACTTTC
AATTGGTGGACAGACTTTTTTAGATTTAAAATGCCCCTTCTAAATTTATTATTTGAGTCTCATTAGAATAGAAACTATTAAGTAGAATGAATACTTAAAATGCACAACAC
AGAAACTTATAACTATCCCTTCACCCCAAGAAAAAGAAAAAAAAAGATGTTGATACGATTATATTTTGCTATAAAAACTCTTGTGATTTAAAATAACTTACCTTTTTTTA
TTTAAACATAAATTTTAAGTTCAGGGTATAAGGATTGATAAATAATTAATTAAAAATCTTGTGATTTGAGGAGATGAATAAAGATTCATTTGGGCATAAATGAAGAGATT
GATGAAGAAATTTAGAGTTGAATGAAAAAGGTTTACAGCTAAAAAATCCATACATTGCCACAAACACAACGATTAAATAAACGAAAGACACAAAAATTACAATTTACTTT
CTTTTTTTTTTTCTTTTACTTCACATTTCCACTCAGCTTCGCTTCACCGGGTCAAAGTTCGCGACGCCGATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGC
CGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAG
CAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAA
GCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGA
GGATTTTGTGGAAAATTGAGGAAGATGTGAATTGGGGATTAGGGGATTTTTGGGAATTGGGAGTGGGCCAGTGAGAAGTAGAAGCGGTGGAAATTGGGGATTTTTGGTGA
GGTTGAAATCTTGATGTTGGTCTGACGTGGCAAGTTCTGAATGCTTTATTGGTGGATAAGGTTATCTTATTGGTCCAATCATCATCTCCTTTCAAATCCTCCGGTAGGGT
CTTCTTATAATTTTGGGCCTTCTTTTGGGCCTCCATAGTCTCTACGTTACTGTTCGTTCCTTCCCTTCCTACGGCTGGACAATATTTTTATAAGAAATTAAACAATAAAA
CTAATCCACCACTGGCCGATGATGGGAGAGGTTGGTTTTAACATCTAATTTACAAAACTAATCAGAGTCAGTTTGATGATAGTTCGGTTAGAAAATTGACTTCAACCGAT
CACTGTGCAGATTGCTTATGCTTCATGCACTAATCTATCAAAAAATGCTTTGGTTAAGATGCAAATTTGGTGTAGTGTTTACGATTTGGTTATCGGATGTAATGAAAATC
TTAGGGGGTCATTAGACGTGCAAATTTGGAATATTAAACCTGAAAATGCCAAGTCTCTTAAAAAAAAACCGTATTTAGGGTGCATGTTTAGGAAGTCAAGCTTTTGGAAA
GCTGTATTTGCAGTGTAGATTTGGGAAGCCTAAAAATGGAGTAATATTATATTGTATTTTAATTT
Protein sequenceShow/hide protein sequence
MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVE
AIDGMKWMEVKGIEDFVEN