; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0043321 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0043321
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionNuclear transcription factor Y subunit
Genome locationCMiso1.1chr02:5479049..5484244
RNA-Seq ExpressionCmc02g0043321
SyntenyCmc02g0043321
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001289 - Nuclear transcription factor Y subunit A
IPR018362 - CCAAT-binding factor, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139033.1 nuclear transcription factor Y subunit A-1 [Cucumis sativus]3.0e-14096.65Show/hide
Query:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
        MQSKSETNNQLD NGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQD +KM
Subjt:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM

Query:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
        QHVSSTLPAMHGECL QSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
Subjt:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK

Query:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEA+GKEKHSDKV+ES YRLNDGSEQQ GSSL NKASE
Subjt:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

XP_008450422.1 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis melo]3.8e-159100Show/hide
Query:  MDDNSCASLGFFQGGFERVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSK
        MDDNSCASLGFFQGGFERVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSK
Subjt:  MDDNSCASLGFFQGGFERVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSK

Query:  EVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNA
        EVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNA
Subjt:  EVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNA

Query:  KQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        KQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
Subjt:  KQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

XP_008450423.1 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis melo]8.2e-146100Show/hide
Query:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
        MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
Subjt:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM

Query:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
        QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
Subjt:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK

Query:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
Subjt:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

XP_022154358.1 nuclear transcription factor Y subunit A-1-like [Momordica charantia]4.1e-12989.3Show/hide
Query:  MQSKSETNNQL--DPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTR
        MQSKSETNNQL  DPNGAPSTS+YYEPWWRG+GYN  PLPVVGGN SSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D +
Subjt:  MQSKSETNNQL--DPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTR

Query:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA+  E HSDK +ESGY LNDGSEQ+ GSS MNKAS+
Subjt:  KKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

XP_038879324.1 nuclear transcription factor Y subunit A-1-like [Benincasa hispida]1.4e-13795.17Show/hide
Query:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
        MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQD +KM
Subjt:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM

Query:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
        QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
Subjt:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK

Query:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        SIKARKPYLHESRHQHAIRRSRSSGGRFAKK+E DGK    DKV+ESGYRLN+GSEQQ GSSL N+ASE
Subjt:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

TrEMBL top hitse value%identityAlignment
A0A0A0M2S3 Nuclear transcription factor Y subunit1.5e-14096.65Show/hide
Query:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
        MQSKSETNNQLD NGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQD +KM
Subjt:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM

Query:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
        QHVSSTLPAMHGECL QSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
Subjt:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK

Query:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEA+GKEKHSDKV+ES YRLNDGSEQQ GSSL NKASE
Subjt:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

A0A1S3BP85 Nuclear transcription factor Y subunit1.8e-159100Show/hide
Query:  MDDNSCASLGFFQGGFERVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSK
        MDDNSCASLGFFQGGFERVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSK
Subjt:  MDDNSCASLGFFQGGFERVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSK

Query:  EVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNA
        EVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNA
Subjt:  EVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNA

Query:  KQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        KQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
Subjt:  KQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

A0A1S3BPV3 Nuclear transcription factor Y subunit4.0e-146100Show/hide
Query:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
        MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
Subjt:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM

Query:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
        QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
Subjt:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK

Query:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
Subjt:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

A0A5D3D5Q2 Nuclear transcription factor Y subunit4.0e-146100Show/hide
Query:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
        MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM
Subjt:  MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKM

Query:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
        QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK
Subjt:  QHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKK

Query:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
Subjt:  SIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

A0A6J1DK42 Nuclear transcription factor Y subunit2.0e-12989.3Show/hide
Query:  MQSKSETNNQL--DPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTR
        MQSKSETNNQL  DPNGAPSTS+YYEPWWRG+GYN  PLPVVGGN SSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D +
Subjt:  MQSKSETNNQL--DPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTR

Query:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA+  E HSDK +ESGY LNDGSEQ+ GSS MNKAS+
Subjt:  KKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE

SwissProt top hitse value%identityAlignment
Q84JP1 Nuclear transcription factor Y subunit A-71.3e-2141.24Show/hide
Query:  GSYRQDTRKMQHVSSTLP-AMHGECLTQSTQLELVG--HSIACASNPYQDPYYGGMMAFYGHQPLG--YPMVGGPHARMPLPIEIAQDPVFVNAKQYQGI
        GS+ +  ++  H    +P A + E +  S      G  +S+A    PY DPYY  + A       G    ++G     +PLP +  ++PVFVNAKQY GI
Subjt:  GSYRQDTRKMQHVSSTLP-AMHGECLTQSTQLELVG--HSIACASNPYQDPYYGGMMAFYGHQPLG--YPMVGGPHARMPLPIEIAQDPVFVNAKQYQGI

Query:  LRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSS
        LRRRQ+RA+ E++ K IK+RKPYLHESRH HAIRR R  GGRF    + D  E H D   E    L+ G      SS
Subjt:  LRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSS

Q8VY64 Nuclear transcription factor Y subunit A-47.7e-2244.37Show/hide
Query:  TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYP-----MVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLH
        T S   E + H +     PY DPYY  + A   + P  YP     ++G     +PL  +  ++PVFVNAKQY GILRRRQ+RAK EA  ++IKA+KPY+H
Subjt:  TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYP-----MVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLH

Query:  ESRHQHAIRRSRSSGGRF--AKKSEADGKEKHSDKVSESGYRLNDGSEQQK
        ESRH HAIRR R  GGRF  AKK   D KE+      E+    +     +K
Subjt:  ESRHQHAIRRSRSSGGRF--AKKSEADGKEKHSDKVSESGYRLNDGSEQQK

Q93ZH2 Nuclear transcription factor Y subunit A-31.4e-1834.71Show/hide
Query:  MGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQ-------STQLE
        + +   P   V     S+ SL       +S  G   +   ++ ++ D S   Q+TG  ++  +   D    + +S    A  G  +TQ         Q  
Subjt:  MGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQ-------STQLE

Query:  LVG----HSIACASN---PYQDPYYGGMMA--FYGHQPLGYP-MVGGPHARMPLPIEIAQ-DPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHE
        + G    H     +N    Y DP+YGG++A  +    P   P MV     R+PLP E+ + DPVFVNAKQY  I+RRRQ RAK EA+ K I+ARKPYLHE
Subjt:  LVG----HSIACASN---PYQDPYYGGMMA--FYGHQPLGYP-MVGGPHARMPLPIEIAQ-DPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHE

Query:  SRHQHAIRRSRSSGGRF-------AKKSEADGKEKHSDKVSE
        SRH HA++R R SGGRF        +  +A  +E+  DK+ +
Subjt:  SRHQHAIRRSRSSGGRF-------AKKSEADGKEKHSDKVSE

Q945M9 Nuclear transcription factor Y subunit A-91.8e-4749.41Show/hide
Query:  VEGMQSKSET-NNQLDP--NGAPSTSI-YYEPWWR-GMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGS
        +E M SKS++  N++D   +G  S+SI    PW R     N       G  +S S +L       ESN  +S SN D     + V+KE Q T SP SAG 
Subjt:  VEGMQSKSET-NNQLDP--NGAPSTSI-YYEPWWR-GMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGS

Query:  YRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACA-SNPYQDPYYGGMMAFYGHQPLGYPMVGG-PHARMPLPIEIAQDPVFVNAKQYQGILRRRQ
        Y    ++  H   T P  H          +LVGH++  A SNPYQDPYY G+M  YGH PLG+   GG PH+RMPLP E+AQ+PVFVNAKQYQ ILRRRQ
Subjt:  YRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACA-SNPYQDPYYGGMMAFYGHQPLGYPMVGG-PHARMPLPIEIAQDPVFVNAKQYQGILRRRQ

Query:  ARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVS
        ARAKAE EKK IK+RKPYLHESRHQHA+RR R +GGRFAKK+  +  ++ +++ S
Subjt:  ARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVS

Q9LXV5 Nuclear transcription factor Y subunit A-13.9e-5047.74Show/hide
Query:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR
        G +++ E NN    +      +Y EPWW+   +   P     G  S+S+SL+ PN GSESND  S S +  +N E D   K+ QA  S  S  ++  +  
Subjt:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR

Query:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEA
             + ++  MH + L Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARAKAE 
Subjt:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEA

Query:  EKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS
        E+K I+ RKPYLHESRH+HA+RR+R+SGGRFAKKSE +  E    +  E G   N  GSEQ +  S
Subjt:  EKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS

Arabidopsis top hitse value%identityAlignment
AT3G20910.1 nuclear factor Y, subunit A91.3e-4849.41Show/hide
Query:  VEGMQSKSET-NNQLDP--NGAPSTSI-YYEPWWR-GMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGS
        +E M SKS++  N++D   +G  S+SI    PW R     N       G  +S S +L       ESN  +S SN D     + V+KE Q T SP SAG 
Subjt:  VEGMQSKSET-NNQLDP--NGAPSTSI-YYEPWWR-GMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGS

Query:  YRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACA-SNPYQDPYYGGMMAFYGHQPLGYPMVGG-PHARMPLPIEIAQDPVFVNAKQYQGILRRRQ
        Y    ++  H   T P  H          +LVGH++  A SNPYQDPYY G+M  YGH PLG+   GG PH+RMPLP E+AQ+PVFVNAKQYQ ILRRRQ
Subjt:  YRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACA-SNPYQDPYYGGMMAFYGHQPLGYPMVGG-PHARMPLPIEIAQDPVFVNAKQYQGILRRRQ

Query:  ARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVS
        ARAKAE EKK IK+RKPYLHESRHQHA+RR R +GGRFAKK+  +  ++ +++ S
Subjt:  ARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVS

AT5G12840.1 nuclear factor Y, subunit A12.8e-5147.74Show/hide
Query:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR
        G +++ E NN    +      +Y EPWW+   +   P     G  S+S+SL+ PN GSESND  S S +  +N E D   K+ QA  S  S  ++  +  
Subjt:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR

Query:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEA
             + ++  MH + L Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARAKAE 
Subjt:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEA

Query:  EKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS
        E+K I+ RKPYLHESRH+HA+RR+R+SGGRFAKKSE +  E    +  E G   N  GSEQ +  S
Subjt:  EKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS

AT5G12840.2 nuclear factor Y, subunit A12.1e-5148.88Show/hide
Query:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR
        G +++ E NN    +      +Y EPWW+   +   P     G  S+S+SL+ PN GSESND  S S +  +N E D   K+ QA      A S R D  
Subjt:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR

Query:  KMQHVSSTLPA--MHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA
         M+     L    MH + L Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARAKA
Subjt:  KMQHVSSTLPA--MHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA

Query:  EAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS
        E E+K I+ RKPYLHESRH+HA+RR+R+SGGRFAKKSE +  E    +  E G   N  GSEQ +  S
Subjt:  EAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS

AT5G12840.3 nuclear factor Y, subunit A12.8e-5147.74Show/hide
Query:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR
        G +++ E NN    +      +Y EPWW+   +   P     G  S+S+SL+ PN GSESND  S S +  +N E D   K+ QA  S  S  ++  +  
Subjt:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR

Query:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEA
             + ++  MH + L Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARAKAE 
Subjt:  KMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEA

Query:  EKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS
        E+K I+ RKPYLHESRH+HA+RR+R+SGGRFAKKSE +  E    +  E G   N  GSEQ +  S
Subjt:  EKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS

AT5G12840.4 nuclear factor Y, subunit A12.1e-5148.88Show/hide
Query:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR
        G +++ E NN    +      +Y EPWW+   +   P     G  S+S+SL+ PN GSESND  S S +  +N E D   K+ QA      A S R D  
Subjt:  GMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-VNDEEDDVSKEVQATGSPHSAGSYRQDTR

Query:  KMQHVSSTLPA--MHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA
         M+     L    MH + L Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARAKA
Subjt:  KMQHVSSTLPA--MHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA

Query:  EAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS
        E E+K I+ RKPYLHESRH+HA+RR+R+SGGRFAKKSE +  E    +  E G   N  GSEQ +  S
Subjt:  EAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLN-DGSEQQKGSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACAATTCCTGTGCTTCTTTGGGTTTCTTTCAGGGAGGATTTGAGAGGGTTGAAGGTATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGATCCAAAT
GGTGCACCATCGACGAGTATCTATTATGAACCCTGGTGGCGTGGCATGGGGTACAATACTTTTCCATTACCTGTGGTTGGGGGAAATGCTTCCAGTTCAACTTCT
CTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCTAAAGAAGTGCAAGCTACT
GGATCTCCACATTCTGCGGGAAGCTACAGACAGGATACTCGGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTCTGACGCAGTCTACA
CAACTCGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCTTATCAGGATCCATATTATGGAGGAATGATGGCCTTCTATGGTCATCAGCCCTTGGGCTAT
CCCATGGTTGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCAAAGCAATACCAGGGAATTTTGAGGCGAAGG
CAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAATCGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGAAGTAGT
GGAGGCCGTTTTGCAAAGAAAAGCGAAGCTGACGGAAAAGAAAAGCATTCTGATAAAGTAAGCGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAAA
GGAAGCTCCTTGATGAACAAGGCCTCTGAGTAG
mRNA sequenceShow/hide mRNA sequence
TTTCAATCTCCCTCTTTTTTCCTTTCCCTTTTTCTACCCCTTTTTTTTTTTTTCCCTTCCTTTCATTATTATTATTATTATTATTATTATTATTATTATTATTAT
TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTCAATCTTCATTCTTATTTTTTAATTCTCTCCCATTTCCCTTCTCCCCCAT
CACATTTTTCCCTTCTCTTCATTTCCACCTTGCTCCAATTCCTTCCGGTAACCTATTTTTCTTCAATTTTCCTTCCTTTTCTTTCGCAATCTATGTCTTCTGTTG
CTGTGTTTACTGTGTATGTATTATATCTGGTGTTTGATTTCTAGGGTATTCCCGCAATTCCCTTTTTTACGATTTCTTTTCATCTTTTTCGGGTTTTGGGTTGAT
TGATTTTTCTTTTTCGGATTTAGTTTTGGTTTTGCGATTGTTGAGGAAACTGGTGCTTGTGTTTTTGAAGTTTAAAGCTGATTTGTGTCTGCTATGGATGACAAT
TCCTGTGCTTCTTTGGGTTTCTTTCAGGGAGGATTTGAGAGGGTTGAAGGTATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGATCCAAATGGTGCACCATCG
ACGAGTATCTATTATGAACCCTGGTGGCGTGGCATGGGGTACAATACTTTTCCATTACCTGTGGTTGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCT
AATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCTAAAGAAGTGCAAGCTACTGGATCTCCACAT
TCTGCGGGAAGCTACAGACAGGATACTCGGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTCTGACGCAGTCTACACAACTCGAACTT
GTTGGTCACTCTATTGCTTGTGCATCAAATCCTTATCAGGATCCATATTATGGAGGAATGATGGCCTTCTATGGTCATCAGCCCTTGGGCTATCCCATGGTTGGA
GGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCAAAGCAATACCAGGGAATTTTGAGGCGAAGGCAAGCACGTGCA
AAAGCTGAGGCTGAGAAGAAATCGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGAAGTAGTGGAGGCCGTTTT
GCAAAGAAAAGCGAAGCTGACGGAAAAGAAAAGCATTCTGATAAAGTAAGCGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAAAGGAAGCTCCTTG
ATGAACAAGGCCTCTGAGTAGCAAGGCAACCTGCACTGAATGCCAAGACAATGGCCTGAATTGTTCAGTGGGGTAGGGATCGATTGCTTGTTTGTTAAAAAGTAC
CGAGTTCCTAGCAAAGCATGCTAGGCGGCAAATCATTCTTGGCTTTGTTGTTCTGTTGCTTTGTAGAAAAAGAAAAAGGGATGGTGAATGACATGTGACTTATAG
GATCTCGTGGCTTCTTCAAAGGATTCCTCAAAAGTCCAAGAGATTTCTTCATTCGATTCTCTTTTTTTGCCTTTTTTGTACAGAGTTTATGATGACGTAAGGGAG
TGGGAACTTTGGTCTCTTGTATTATATTAGCAGAGCGTGAAACTAAATGAATCATAAGGCTTAGGATAGATATAGTGATTGTGATTCATAAAGCTTAGACTTGAA
AGATTTTAGATTTGAGTATCTAAAGTTTGACGGATTAGTGATGCAAATCATAATTTTCAGATACATAAATGGATAGAGTTTAAATGGCTACCTTCAGCTTTGACT
TTGACTTATTTTAAAGCCTATTTGTGTATGGAAGGGAGGATTAATGGATGCTTCTCGCCCCCTCAACCTTGAA
Protein sequenceShow/hide protein sequence
MDDNSCASLGFFQGGFERVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQAT
GSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRR
QARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE