CuGenDBv2

Gene ID	Cmc02g0043441
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposable element Tf2
Genome location	CMiso1.1chr02:5741645..5744695
RNA-Seq Expression	Cmc02g0043441
Synteny	Cmc02g0043441
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

3.8e-36

62.5

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Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        MFV RKF + F P SY YRDY +AWY V W ++YNHSWF+TF K++YK +FPNWF+ WW YF L+ EIF VEVQR+Y  F  SIYSS LS T+RF+LYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        + WIFCW+ QL S   FK L
Subjt:  VFWIFCWSHQLSSRTKFKIL

KAA0041673.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.9e-35

61.67

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Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        MFV RKF + F P SY YRDY +AWY V W ++YNHSWF+TF K++YK +FPNWF+ WW YF L+ EIF VEVQR+Y  F  SIYSS LS T+RF+LYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        + WIFCW+ QL     FK L
Subjt:  VFWIFCWSHQLSSRTKFKIL

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.9e-35

61.67

Show/hide

Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        MFV RKF + F P SY YRDY +AWY V W ++YNHSWF+TF K++YK +FPNWF+ WW YF L+ EIF VEVQR+Y  F  SIYSS LS T+RF+LYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        + WIFCW+ QL     FK L
Subjt:  VFWIFCWSHQLSSRTKFKIL

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

3.8e-36

62.5

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Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        MFV RKF + F P SY YRDY +AWY V W ++YNHSWF+TF K++YK +FPNWF+ WW YF L+ EIF VEVQR+Y  F  SIYSS LS T+RF+LYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        + WIFCW+ QL S   FK L
Subjt:  VFWIFCWSHQLSSRTKFKIL

TYK23161.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.4e-51

83.33

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Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        M+VP KF   FNPQSYTYRDY+E WYK+ WHE +NHSWFITF KKSYKTNFPNWFKKWWSYF LT EIFLVEVQRAY+HFS SIY+SALS TYRFSLYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        V WIFCWSHQLSSR KFKIL
Subjt:  VFWIFCWSHQLSSRTKFKIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TBK1 Retrotransposable element Tf2

1.8e-36

62.5

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Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        MFV RKF + F P SY YRDY +AWY V W ++YNHSWF+TF K++YK +FPNWF+ WW YF L+ EIF VEVQR+Y  F  SIYSS LS T+RF+LYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        + WIFCW+ QL S   FK L
Subjt:  VFWIFCWSHQLSSRTKFKIL

A0A5A7UVN1 Retrotransposable element Tf2

9.1e-36

61.67

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Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        MFV RKF + F P SY YRDY +AWY V W ++YNHSWF+TF K++YK +FPNWF+ WW YF L+ EIF VEVQR+Y  F  SIYSS LS T+RF+LYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        + WIFCW+ QL     FK L
Subjt:  VFWIFCWSHQLSSRTKFKIL

A0A5D3C4Q3 Retrotransposable element Tf2

9.1e-36

61.67

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Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        MFV RKF + F P SY YRDY +AWY V W ++YNHSWF+TF K++YK +FPNWF+ WW YF L+ EIF VEVQR+Y  F  SIYSS LS T+RF+LYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        + WIFCW+ QL     FK L
Subjt:  VFWIFCWSHQLSSRTKFKIL

A0A5D3D2Q6 Retrotransposable element Tf2

1.8e-36

62.5

Show/hide

Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        MFV RKF + F P SY YRDY +AWY V W ++YNHSWF+TF K++YK +FPNWF+ WW YF L+ EIF VEVQR+Y  F  SIYSS LS T+RF+LYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        + WIFCW+ QL S   FK L
Subjt:  VFWIFCWSHQLSSRTKFKIL

A0A5D3DHL2 Retrotransposable element Tf2

6.9e-52

83.33

Show/hide

Query:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ
        M+VP KF   FNPQSYTYRDY+E WYK+ WHE +NHSWFITF KKSYKTNFPNWFKKWWSYF LT EIFLVEVQRAY+HFS SIY+SALS TYRFSLYFQ
Subjt:  MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQ

Query:  VFWIFCWSHQLSSRTKFKIL
        V WIFCWSHQLSSR KFKIL
Subjt:  VFWIFCWSHQLSSRTKFKIL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTGTTCCCAGAAAATTTTACAATGTGTTTAATCCTCAATCGTACACGTACCGAGACTACGTGGAAGCTTGGTACAAAGTACTTTGGCATGAGTCATACAAC
CACTCCTGGTTTATTACGTTTTATAAGAAATCTTACAAAACTAATTTTCCAAATTGGTTCAAAAAATGGTGGAGCTATTTCGCCCTAACTCTAGAGATCTTCCTA
GTTGAGGTCCAACGAGCCTACCGCCACTTTTCAATAAGCATCTATTCATCTGCACTTTCGCCGACATATAGATTCTCCCTTTATTTTCAAGTGTTTTGGATATTC
TGTTGGAGTCACCAGCTTTCATCCAGAACAAAGTTCAAAATCTTGCTCTGA

mRNA sequence

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TTCTGGTTGGAAATAAAAATATACTTTTCATTCTGGTTGGAAATCCAACTAGGGCTCGAAAATATTGAAGTTGTAATAAGAATCATTATCGATTGAAAATCCAAC
TAGGGCTCGAAAATATCAAAGTTGTAATAAGGATCATTATCAAAATCGATATCATTGATGGATGAATCTGAAAGGTTTGCGATATCTTCAGGTTCATCTTGTTTG
TTGTCGTCAGAAGTATTGTTGATGATTGTTTCCATGACCGCCTGGAGGTTTGCTTCAGACTTTGCTCCGACAATGGATGTCAGGATTGAGTTCTTTGCGAGAAGG
AATTGGTCTTCTTCTTCTCGTGAGAGATGAGCATTGGTTTAGAACCATTTCGCTATTTATTCCACGCTCAGATGGGAATAGTCATATTTATCTCACCATTTGACG
CGCAAAATCTTTCCCAAGATTTTGAACTTTGCTTTGGATGAAAGCCGGTGACTCCAACAGAATATCCAAAACACTTGAAAATAAAGAGAGAATCTATACGTCGGC
GAAAGTGCAGACGAATAGATGGTTGTTGAGAAGTGGCGGTAAGCTCGTTGGACCTCAACTGGGAAGATCTCTGTAGTTAGCGCGAAACAGCTCCACCATTTTTGA
AGCCAATTTAGAAAATTAGTTTTGTAAGATTTCTTATAAAACGTAATAAACCAAAAGTGGTTGTGTGACTCATGCCAAAGTACCTTGTACCAAGCTTCCATGTAG
TCTTGTATGTGTACGATTGAGGATTAAACAACTTGTAAAATTTATGGGAATAAACATTCCTTGAAGCCAATGGGATTGTGTTAGAACCCTATAGATTTTTAGCTT
GGAATAGACATTTTCTCTAGGTTATTCCGATCTCTGGAGAAATCACTCATATTCCAGATTGGAATAACCCAGAGAAAATTGTCTATTCCAAGCTAAAAATCTTTA
GGGTTCTAACACCATCCCATTGGCCTCAAGGGATGTTTGTTCCCAGAAAATTTTACAATGTGTTTAATCCTCAATCGTACACGTACCGAGACTACGTGGAAGCTT
GGTACAAAGTACTTTGGCATGAGTCATACAACCACTCCTGGTTTATTACGTTTTATAAGAAATCTTACAAAACTAATTTTCCAAATTGGTTCAAAAAATGGTGGA
GCTATTTCGCCCTAACTCTAGAGATCTTCCTAGTTGAGGTCCAACGAGCCTACCGCCACTTTTCAATAAGCATCTATTCATCTGCACTTTCGCCGACATATAGAT
TCTCCCTTTATTTTCAAGTGTTTTGGATATTCTGTTGGAGTCACCAGCTTTCATCCAGAACAAAGTTCAAAATCTTGCTCTGATACCATTAAGGGCATAACATGT
GTCTTGACAATATTGTTATGTAACATGACTTCTCTTATTACCGATTAAATTTGCGATTGGCAGATGTTTTGTCCAAAAAAAAAAAGGAAAAATAAAAGAAGGATT
TGAATTCAAAATTATGAGTTCAAGAGATAACATAACCTAATAATGTTAAAATAACACGACTTCGTCTCGTTTCCATTTGTAAGATTACATGTGAAAGTTTACACT
TTAGATTGATATATAAAGTTATATTTGAGTTATTTTTTATTGAGTTAATGTTTAACTTCTATGATGAAGCATTTTCACTTAGAGATCCATCCATAGAACAAGAAG
ACAAATAGCTTTTATTTATACATATAAAAACACATAGCAATACATTGATCCAAAGACCTTATATTATTCACATTTTCCATGTTCCTTCTATAGTGCAAAAGAAAA
TTAGAAATCCATTATCCTAAAAACCACCATTTCTTCCACACCTTTCTTCTCTCAAAACAAACAGACACACATACACACACACACACACTATATATATATATATAT
ATATATATATATATATATATATATATAAATTTCCTCCTCTCATTACCAAAGTAATTAATTAAACAAGAACACCCTTAATTAGTTACTTACTTGAGCCTCTTTTGA
AGAACCAAAAACTTACTTAGGAAACGTAGGTATTTGCAGCTGAGGAGGCCAATCAGAAGGCAATTGAACTTGATCCCACATAGTAACTTTTTGAACAACATCACC
ACTATTATCTCCAAAAATCTCTGTCTGGAAAAACACTGTTTTTCCAACAGGACTCTCAATCAAAGCTTCTGATCCAAAATTGTTTTGGTTCAACTTGTAACATGT
CCTACATGTCACCGCAATTGGCTCACACCCTTTTGGAATTTGATCAAACCCTTTTATCGAAAAGTGGACACTCACAACATTAGCGATTGCTGAAAACAAAGACAA
ATTTATGTTTGGAAAAACATTGAAATAAAATGGACCATCTCTTAAATTTGATTCAACTAAAGCAATTAGTGAATCTTCAAGTTTTTCAATTCTATTGTCACGTAG
ACATAAAATTATGGAAGCATTTGGAGGGATTTTTTTGGTTAGGGTTTTTACACCAATTTGAACAAGGCCTATGTTCATTGTGTTGAATCTTCCAAAATCACTAGG
AGGGGTTTGATTAAATAATCTGAAAAATCCTCCTTTATTGCCAAAGCTAATATGGGCTTCTGTGGTTTCGATGGAAGGATCAGAATTCTTTGAAGGAAAAATAAA
AAAGTGGTTTTTTCTTCTTTCTTCATAGATTTTGTGGATTGGGACTTTTGGCATCTTCCATTTCACTAAACTTTTCCCTTTTTCAACATATTCTTCTTTTTCTAA
TGAATGATCACCAACAAATTTCTTGGAGCTGCAAGACTTAAGAAAGAGTGACATTTTTTTTTCCTTCTTGAGACAAGAACCGATGATAAAAAAATAATAGCGCAC
CTCTTTTGATATTTTGGTTTCTTTGAACACAACAAATATATGCTAAGAAACACTTGGGAAATATTTTTTTTTGATGCAATGTGTGGTTGTTCCAATTTGAAGAAA
TGCCACCTTTATAGGAGTGTCACGAGTGTGTGAATTATTGAGGGTAGAGAGAAAGCTAAGAGAGATAAATTAAAGACAAAATAGTACAATGTAAACTTGTCGAGG
AAGTTT

Protein sequence

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MFVPRKFYNVFNPQSYTYRDYVEAWYKVLWHESYNHSWFITFYKKSYKTNFPNWFKKWWSYFALTLEIFLVEVQRAYRHFSISIYSSALSPTYRFSLYFQVFWIF
CWSHQLSSRTKFKILL

Cmc02g0043441 (gene) of Melon (Charmono) v1.1 genome