; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0044681 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0044681
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase
Genome locationCMiso1.1chr02:7905353..7906141
RNA-Seq ExpressionCmc02g0044681
SyntenyCmc02g0044681
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055928.1 integrase [Cucumis melo var. makuwa]1.2e-148100Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

KAA0060377.1 integrase [Cucumis melo var. makuwa]8.2e-14597.33Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        ME+PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYE+IFAPVT+IETIRLIL LAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFT NDKFLCDDFKNSMK EFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMD NLKLCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

TYJ95504.1 integrase [Cucumis melo var. makuwa]8.2e-14597.33Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        ME+PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYE+IFAPVT+IETIRLIL LAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFT NDKFLCDDFKNSMK EFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMD NLKLCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

TYK28134.1 integrase [Cucumis melo var. makuwa]1.3e-14598.09Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVT+IETIRLIL LAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFT NDKFLCDDFKNSMK EFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMD NLKLCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

TYK30104.1 integrase [Cucumis melo var. makuwa]6.3e-14597.33Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        ME+PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYE+IFAPVT+IETIRLIL LAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFT NDKFLCDDFKNSMKKEFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMD NL+LCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

TrEMBL top hitse value%identityAlignment
A0A5A7ULH0 Integrase5.9e-149100Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

A0A5D3BQ81 Integrase4.0e-14597.33Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        ME+PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYE+IFAPVT+IETIRLIL LAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFT NDKFLCDDFKNSMK EFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMD NLKLCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

A0A5D3CLV1 Integrase4.0e-14597.33Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        ME+PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYE+IFAPVT+IETIRLIL LAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFT NDKFLCDDFKNSMK EFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMD NLKLCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

A0A5D3DX80 Integrase6.1e-14698.09Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVT+IETIRLIL LAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFT NDKFLCDDFKNSMK EFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMD NLKLCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

A0A5D3E2J1 Integrase3.0e-14597.33Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        ME+PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYE+IFAPVT+IETIRLIL LAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
        QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFT NDKFLCDDFKNSMKKEFEMSDMGLIHYFL
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMD NL+LCKDDIGEAVDPSLYRSLV
Subjt:  GIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

SwissProt top hitse value%identityAlignment
P04146 Copia protein7.7e-4538.75Show/hide
Query:  PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQRG
        P NK  +  +WV+  K    GN  +YKARLV +G+ Q+Y +DYE+ FAPV +I + R IL L  Q   KV+QMDVK+AFLNG LKEEI++  P G     
Subjt:  PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQRG

Query:  EEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYV-KEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGI
          + V KL KA+YGLKQA R W+   +    +  F     +  +Y+  +    + + V LYVDD++    D    ++FK  + ++F M+D+  I +F+GI
Subjt:  EEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYV-KEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGI

Query:  EVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNL
         +   E +I +SQ  Y   +L KF MEN +  +TP+ + +
Subjt:  EVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.6e-5342.34Show/hide
Query:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV
        +E+P  K+ L  KWV++ K   D  + +YKARLVVKG++Q+ G+D+++IF+PV K+ +IR IL LAA    +V Q+DVK+AFL+G L+EEI++ QP G+ 
Subjt:  MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYV

Query:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL
          G++  V KL K+LYGLKQAPR WY + DSF     + +   +  +Y K      F+I+ LYVDD+L    DK L    K  + K F+M D+G     L
Subjt:  QRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFL

Query:  GIEV--NQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCK
        G+++   +   ++ +SQ+KY   +L++F M+NA P +TP+  +LKL K
Subjt:  GIEV--NQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCK

P25600 Putative transposon Ty5-1 protein YCL074W4.1e-2232.98Show/hide
Query:  MDVKSAFLNGHLKEEIFVAQPLGYVQRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKF
        MDV +AFLN  + E I+V QP G+V     + V++L   +YGLKQAP  W   I++   K GF R   EH LY +    G  + +++YVDDLL       
Subjt:  MDVKSAFLNGHLKEEIFVAQPLGYVQRGEEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKF

Query:  LCDDFKNSMKKEFEMSDMGLIHYFLGIEVNQ-NEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        + D  K  + K + M D+G +  FLG+ ++Q + G+I +S Q Y      +  +       TP+  +  L +       D + Y+S+V
Subjt:  LCDDFKNSMKKEFEMSDMGLIHYFLGIEVNQ-NEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.1e-5039.23Show/hide
Query:  PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQRG
        P++   +G +W++  K  SDG++ +YKARLV KGY Q  G+DY + F+PV K  +IR++L +A    W + Q+DV +AFL G L ++++++QP G++ + 
Subjt:  PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQRG

Query:  EEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSL-YVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGI
            V KL+KALYGLKQAPRAWY  + ++ L  GF     + +L+V +   GK ++  L YVDD+L T ND  L  +  +++ + F + D   +HYFLGI
Subjt:  EEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSL-YVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGI

Query:  EVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        E  +    + +SQ++Y  DLL +  M  A P  TPM  + KL      +  DP+ YR +V
Subjt:  EVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.6e-5039.23Show/hide
Query:  PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQRG
        P +   +G +W++  K  SDG++ +YKARLV KGY Q  G+DY + F+PV K  +IR++L +A    W + Q+DV +AFL G L +E++++QP G+V + 
Subjt:  PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQRG

Query:  EEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSL-YVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGI
          + V +L+KA+YGLKQAPRAWY  + ++ L  GF     + +L+V +   G+ +I  L YVDD+L T ND  L     +++ + F + +   +HYFLGI
Subjt:  EEEKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSL-YVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGI

Query:  EVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        E  +    + +SQ++Y  DLL +  M  A P  TPM T+ KL      +  DP+ YR +V
Subjt:  EVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 86.6e-5238.64Show/hide
Query:  VPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQR
        +P NK+ +G KWVY+ K  SDG +E+YKARLV KGY Q+ G+D+ + F+PV K+ +++LIL ++A   + ++Q+D+ +AFLNG L EEI++  P GY  R
Subjt:  VPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQR

Query:  GEE----EKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHY
          +      V  LKK++YGLKQA R W+ +     +  GF +   +H  ++K      FL V +YVDD++   N+    D+ K+ +K  F++ D+G + Y
Subjt:  GEE----EKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHY

Query:  FLGIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV
        FLG+E+ ++   I I Q+KYA DLL +  +    P + PMD ++       G+ VD   YR L+
Subjt:  FLGIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV

ATMG00810.1 DNA/RNA polymerases superfamily protein4.4e-1134.65Show/hide
Query:  LYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSL
        LYVDD+L T +   L +     +   F M D+G +HYFLGI++  +   + +SQ KYA  +L    M +  P +TP+   L        +  DPS +RS+
Subjt:  LYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGIEVNQNEGEIVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSL

Query:  V
        V
Subjt:  V

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.4e-1249.23Show/hide
Query:  PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQ
        P N+  LG KWV++TKL SDG +++ KARLV KG+ QE G+ + + ++PV +  TIR IL +A Q
Subjt:  PTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTTCCAACAAACAAACAAGCTCTTGGAGTAAAATGGGTGTACAGAACAAAGTTGAAGTCAGATGGTAATGTTGAAAAATACAAGGCAAGACTTGTTGTA
AAAGGCTACAAGCAGGAATATGGTGTGGATTATGAAGACATATTTGCCCCTGTGACAAAAATTGAGACCATTCGATTGATTTTGTTATTAGCTGCTCAAAATGGA
TGGAAAGTTTATCAAATGGATGTAAAATCCGCTTTTTTGAATGGACACTTGAAGGAAGAGATATTTGTTGCACAACCTTTGGGCTATGTGCAAAGGGGAGAAGAA
GAAAAAGTGTACAAGTTGAAAAAAGCCTTGTATGGATTGAAGCAAGCTCCGCGAGCTTGGTACAGTCGTATCGACAGTTTTTTTCTAAAGACAGGATTTCGAAGG
TGTCCATATGAGCATGCACTCTATGTCAAAGAAGACAAGTATGGCAAATTTCTCATTGTTTCTCTTTACGTTGATGATTTACTTTTTACTAGAAATGATAAATTT
TTGTGTGATGATTTTAAGAATTCCATGAAAAAGGAATTCGAGATGAGTGATATGGGTCTCATCCACTACTTTCTCGGAATTGAAGTTAATCAAAATGAAGGAGAA
ATTGTCATTTCACAACAAAAATATGCTCATGATTTACTAAAAAAATTTCGGATGGAAAATGCTTCACCTTGCAACACTCCCATGGATACAAATTTGAAATTGTGC
AAGGATGATATTGGAGAAGCAGTCGATCCAAGTTTATATCGAAGCTTAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTTCCAACAAACAAACAAGCTCTTGGAGTAAAATGGGTGTACAGAACAAAGTTGAAGTCAGATGGTAATGTTGAAAAATACAAGGCAAGACTTGTTGTA
AAAGGCTACAAGCAGGAATATGGTGTGGATTATGAAGACATATTTGCCCCTGTGACAAAAATTGAGACCATTCGATTGATTTTGTTATTAGCTGCTCAAAATGGA
TGGAAAGTTTATCAAATGGATGTAAAATCCGCTTTTTTGAATGGACACTTGAAGGAAGAGATATTTGTTGCACAACCTTTGGGCTATGTGCAAAGGGGAGAAGAA
GAAAAAGTGTACAAGTTGAAAAAAGCCTTGTATGGATTGAAGCAAGCTCCGCGAGCTTGGTACAGTCGTATCGACAGTTTTTTTCTAAAGACAGGATTTCGAAGG
TGTCCATATGAGCATGCACTCTATGTCAAAGAAGACAAGTATGGCAAATTTCTCATTGTTTCTCTTTACGTTGATGATTTACTTTTTACTAGAAATGATAAATTT
TTGTGTGATGATTTTAAGAATTCCATGAAAAAGGAATTCGAGATGAGTGATATGGGTCTCATCCACTACTTTCTCGGAATTGAAGTTAATCAAAATGAAGGAGAA
ATTGTCATTTCACAACAAAAATATGCTCATGATTTACTAAAAAAATTTCGGATGGAAAATGCTTCACCTTGCAACACTCCCATGGATACAAATTTGAAATTGTGC
AAGGATGATATTGGAGAAGCAGTCGATCCAAGTTTATATCGAAGCTTAGTTTGA
Protein sequenceShow/hide protein sequence
MEVPTNKQALGVKWVYRTKLKSDGNVEKYKARLVVKGYKQEYGVDYEDIFAPVTKIETIRLILLLAAQNGWKVYQMDVKSAFLNGHLKEEIFVAQPLGYVQRGEE
EKVYKLKKALYGLKQAPRAWYSRIDSFFLKTGFRRCPYEHALYVKEDKYGKFLIVSLYVDDLLFTRNDKFLCDDFKNSMKKEFEMSDMGLIHYFLGIEVNQNEGE
IVISQQKYAHDLLKKFRMENASPCNTPMDTNLKLCKDDIGEAVDPSLYRSLV