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Cmc02g0044871 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0044871
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr02:8027904..8028344
RNA-Seq ExpressionCmc02g0044871
SyntenyCmc02g0044871
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041166.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.6e-6587.67Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        MI+T DD QAISD QCYLGKHFEMKDLGNLNYFLGLE+ SS SGYYLSQAKYASDL+NRSGITDSATFSTPLDPNVRLT  DGVPL++PT YRQLVGSLI
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        YLT+TRPDIAY +HIVSQFMAAP TIHFTVVLRILRYIKGT GHGL
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.6e-6588.36Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        MI+T DD QAISD QCYLGKHFEMKDLGNLNYFLGLE+ SS SGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLT  DGVPL++PT YRQLVGSLI
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        YLT+TRPDIAY VHIVSQFMAAP TIHFT VLRILRYIKGT GHGL
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

KAA0055912.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-7199.29Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLI
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG
        YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG

TYK28115.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.7e-7198.57Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        MIVT DDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLI
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG
        YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG

XP_016900875.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]1.3e-7093.79Show/hide
Query:  IVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIY
        + T DD QAISDQQCYLGKHFEMKDLGNLNYFLGLEL SSPSGYYLSQ KYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLIY
Subjt:  IVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIY

Query:  LTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        LT+TRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG FGHGL
Subjt:  LTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

TrEMBL top hitse value%identityAlignment
A0A1S4DYS8 uncharacterized mitochondrial protein AtMg00810-like6.1e-7193.79Show/hide
Query:  IVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIY
        + T DD QAISDQQCYLGKHFEMKDLGNLNYFLGLEL SSPSGYYLSQ KYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLIY
Subjt:  IVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIY

Query:  LTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        LT+TRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG FGHGL
Subjt:  LTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

A0A5A7UJ64 Putative mitochondrial protein5.6e-7299.29Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLI
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG
        YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-6588.36Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        MI+T DD QAISD QCYLGKHFEMKDLGNLNYFLGLE+ SS SGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLT  DGVPL++PT YRQLVGSLI
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        YLT+TRPDIAY VHIVSQFMAAP TIHFT VLRILRYIKGT GHGL
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

A0A5D3DWU7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-6588.36Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        MI+T DD QAISD QCYLGKHFEMKDLGNLNYFLGLE+ SS SGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLT  DGVPL++PT YRQLVGSLI
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        YLT+TRPDIAY VHIVSQFMAAP TIHFT VLRILRYIKGT GHGL
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

A0A5D3DXQ2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-7198.57Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        MIVT DDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLI
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG
        YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKG

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.3e-1334.87Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSG--YYLSQAKYASDLLNRSGITDSATFSTPLDPNVRL------TSVDGVPLDNPTFY
        M++   D   I+  +  L K F+MKDLG     LG+++    +    +LSQ KY   +L R  + ++   STPL  +++L      T+V+         Y
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSG--YYLSQAKYASDLLNRSGITDSATFSTPLDPNVRL------TSVDGVPLDNPTFY

Query:  RQLVGSLIY-LTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFG
           VGSL+Y +  TRPDIA+ V +VS+F+  P   H+  V  ILRY++GT G
Subjt:  RQLVGSLIY-LTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFG

P25600 Putative transposon Ty5-1 protein YCL074W1.8e-1136.51Show/hide
Query:  LGKHFEMKDLGNLNYFLGLELFSSPSG-YYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMT-RPDIAYPVHI
        L K + MKDLG ++ FLGL +  S +G   LS   Y +   + S I       TPL  +  L       L + T Y+ +VG L++   T RPDI+YPV +
Subjt:  LGKHFEMKDLGNLNYFLGLELFSSPSG-YYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMT-RPDIAYPVHI

Query:  VSQFMAAPCTIHFTVVLRILRYIKGT
        +S+F+  P  IH     R+LRY+  T
Subjt:  VSQFMAAPCTIHFTVVLRILRYIKGT

P92519 Uncharacterized mitochondrial protein AtMg008103.4e-2648.06Show/hide
Query:  LGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVS
        L   F MKDLG ++YFLG+++ + PSG +LSQ KYA  +LN +G+ D    STPL P    +SV      +P+ +R +VG+L YLT+TRPDI+Y V+IV 
Subjt:  LGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVS

Query:  QFMAAPCTIHFTVVLRILRYIKGTFGHGL
        Q M  P    F ++ R+LRY+KGT  HGL
Subjt:  QFMAAPCTIHFTVVLRILRYIKGTFGHGL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.4e-2541.1Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        +++T +D   + +    L + F +KD   L+YFLG+E    P+G +LSQ +Y  DLL R+ +  +   +TP+ P+ +L+   G  L +PT YR +VGSL 
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        YL  TRPDI+Y V+ +SQFM  P   H   + RILRY+ GT  HG+
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.5e-2338.36Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        +++T +D+  +      L + F +K+  +L+YFLG+E    P G +LSQ +Y  DLL R+ +  +   +TP+  + +LT   G  L +PT YR +VGSL 
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        YL  TRPD++Y V+ +SQ+M  P   H+  + R+LRY+ GT  HG+
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.3e-2540.41Show/hide
Query:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI
        +I+  ++  A+ + +  L   F+++DLG L YFLGLE+  S +G  + Q KYA DLL+ +G+      S P+DP+V  ++  G    +   YR+L+G L+
Subjt:  MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLI

Query:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        YL +TR DI++ V+ +SQF  AP   H   V++IL YIKGT G GL
Subjt:  YLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

ATMG00240.1 Gag-Pol-related retrotransposon family protein2.3e-0646.81Show/hide
Query:  IYLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL
        +YLT+TRPD+ + V+ +SQF +A  T     V ++L Y+KGT G GL
Subjt:  IYLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

ATMG00810.1 DNA/RNA polymerases superfamily protein2.4e-2748.06Show/hide
Query:  LGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVS
        L   F MKDLG ++YFLG+++ + PSG +LSQ KYA  +LN +G+ D    STPL P    +SV      +P+ +R +VG+L YLT+TRPDI+Y V+IV 
Subjt:  LGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVS

Query:  QFMAAPCTIHFTVVLRILRYIKGTFGHGL
        Q M  P    F ++ R+LRY+KGT  HGL
Subjt:  QFMAAPCTIHFTVVLRILRYIKGTFGHGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTTACAATCGATGACTCTCAAGCCATATCTGATCAGCAATGTTACCTAGGTAAGCATTTTGAGATGAAAGACTTAGGAAATCTCAACTATTTTCTTGGT
CTTGAGCTCTTCTCATCACCTAGTGGTTACTATTTATCTCAAGCAAAATATGCATCTGACCTCCTCAATCGATCTGGTATTACTGATTCTGCCACTTTCTCAACA
CCTCTGGATCCAAATGTGCGTCTCACTTCTGTTGATGGTGTTCCCCTTGACAATCCCACTTTTTATAGGCAACTTGTTGGCAGCCTAATTTACTTAACTATGACT
CGTCCAGATATTGCATATCCAGTTCATATTGTTAGTCAGTTCATGGCTGCCCCTTGTACAATTCACTTCACCGTCGTCCTTCGCATTCTTCGCTACATCAAAGGT
ACTTTTGGTCATGGTCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGTTACAATCGATGACTCTCAAGCCATATCTGATCAGCAATGTTACCTAGGTAAGCATTTTGAGATGAAAGACTTAGGAAATCTCAACTATTTTCTTGGT
CTTGAGCTCTTCTCATCACCTAGTGGTTACTATTTATCTCAAGCAAAATATGCATCTGACCTCCTCAATCGATCTGGTATTACTGATTCTGCCACTTTCTCAACA
CCTCTGGATCCAAATGTGCGTCTCACTTCTGTTGATGGTGTTCCCCTTGACAATCCCACTTTTTATAGGCAACTTGTTGGCAGCCTAATTTACTTAACTATGACT
CGTCCAGATATTGCATATCCAGTTCATATTGTTAGTCAGTTCATGGCTGCCCCTTGTACAATTCACTTCACCGTCGTCCTTCGCATTCTTCGCTACATCAAAGGT
ACTTTTGGTCATGGTCTATAG
Protein sequenceShow/hide protein sequence
MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMT
RPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL