; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0045151 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0045151
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr02:8636863..8637999
RNA-Seq ExpressionCmc02g0045151
SyntenyCmc02g0045151
Gene Ontology termsGO:0000055 - ribosomal large subunit export from nucleus (biological process)
GO:0006488 - dolichol-linked oligosaccharide biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036990.1 protein SDA1-like protein isoform X2 [Cucumis melo var. makuwa]7.1e-18281.87Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        +LQYKGR+VIA  S+LIP ILHTY++SVFGGH GF RTYKRLT ELFW G+KGDVQK+C ECTVCQRN+S     A LLTPLEIP+RIWDDIS DFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PKAAGFEVI VV+D  SKY HFLTLK+PFDAK VAE+FVKEVVRLHGFP+ IVSDRDKIFLS+FWKELFRLAGTKLNRST +HPQTDGQTEV+N S+EAY
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGERP+EW+KWIHW EYWYNTTYQRSLGVSPFQAVYGR PPPL+ YGD  T+NSTLD+QLKQRD+ALGALKEHLRVA++KMK+YADLK+RHVEF E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPEL
        GDMVYLKLRPYRQVS R+R+NEKLSPKYFG YKV+K+IG VAY+LEL PTA IHPVFHISQLKRAFG+CQNP EL
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPEL

KAA0038753.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-16573.64Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        +L++KGRLVI NKS+LIP ILHTYH+SVFGGH GF RTYKRLT E++W G+K D+ ++C+EC +CQRNKS +LSPA LL PLEIP  IW DISMDFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PK+ G++VIFVV+D LSKY HFL LK+PF AK+VAE FVKEVVRLHG+PRSIVSDRDK+FLS+FWKELFRLAGTKLNRS+++HPQ+DGQTEVVN+S+E Y
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGE+P EW +W+HWAEYWYNTTY  S+G++PFQAVYGR PPPLI YGD ET NSTLD+QLK RD+ LGALKEHL++AQE+MK +AD K+R VEF E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGE
        GDMV+LKLRPYRQ S R+++NEKLSPK+FGPY+V++RIG VAYKLEL   A IHPVFH+SQLK+A G+
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGE

KAA0060163.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]3.3e-20399.71Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKL
        GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYK+
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKL

KAA0066077.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]2.1e-18984.27Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        MLQYKGR+VIA  S+LIP ILHTYH+SVF GH GF RTYKRLT ELFW G+KGDVQK+C+ECTVCQRNKSLSLSPA LLTPLEIP+RIWD ISMDFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PKAAGF+VI VV+D  SKYAHFL LK+PFDA+IVAE+FVKEVVRLHGFP+SIVSDRDK+FLS+FWKELFRLAGTKLNRSTT+HPQTDGQTEVV+RS+EAY
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGERP+EW+KWIHWAEYWYN TYQ+SLGVSPFQAVYGR P PL+ YGDH T+NSTLDEQLKQRD+ALGALKEHLRVAQ+KMK+YADLK+RHVEF E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPEL
        GDMVYLKLRPYRQVS R+R+NEKLSPKYFGPYKV+K+IG VAY+LEL PTA IHPVFHISQLKRAFG+CQNP  L
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPEL

TYK04251.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.3e-20199.13Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PKAAGFEVIFVVLD LSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALK+HLRVAQEKMKSYADLKQRHVEFHE
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKL
        GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYK+
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKL

TrEMBL top hitse value%identityAlignment
A0A5A7SS61 Ty3/gypsy retrotransposon protein1.7e-16573.64Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        +L++KGRLVI NKS+LIP ILHTYH+SVFGGH GF RTYKRLT E++W G+K D+ ++C+EC +CQRNKS +LSPA LL PLEIP  IW DISMDFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PK+ G++VIFVV+D LSKY HFL LK+PF AK+VAE FVKEVVRLHG+PRSIVSDRDK+FLS+FWKELFRLAGTKLNRS+++HPQ+DGQTEVVN+S+E Y
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGE+P EW +W+HWAEYWYNTTY  S+G++PFQAVYGR PPPLI YGD ET NSTLD+QLK RD+ LGALKEHL++AQE+MK +AD K+R VEF E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGE
        GDMV+LKLRPYRQ S R+++NEKLSPK+FGPY+V++RIG VAYKLEL   A IHPVFH+SQLK+A G+
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGE

A0A5A7T0V2 Protein SDA1-like protein isoform X23.4e-18281.87Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        +LQYKGR+VIA  S+LIP ILHTY++SVFGGH GF RTYKRLT ELFW G+KGDVQK+C ECTVCQRN+S     A LLTPLEIP+RIWDDIS DFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PKAAGFEVI VV+D  SKY HFLTLK+PFDAK VAE+FVKEVVRLHGFP+ IVSDRDKIFLS+FWKELFRLAGTKLNRST +HPQTDGQTEV+N S+EAY
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGERP+EW+KWIHW EYWYNTTYQRSLGVSPFQAVYGR PPPL+ YGD  T+NSTLD+QLKQRD+ALGALKEHLRVA++KMK+YADLK+RHVEF E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPEL
        GDMVYLKLRPYRQVS R+R+NEKLSPKYFG YKV+K+IG VAY+LEL PTA IHPVFHISQLKRAFG+CQNP EL
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPEL

A0A5A7UW14 Transposon Ty3-G Gag-Pol polyprotein1.6e-20399.71Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKL
        GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYK+
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKL

A0A5A7VG68 Transposon Tf2-9 polyprotein1.0e-18984.27Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        MLQYKGR+VIA  S+LIP ILHTYH+SVF GH GF RTYKRLT ELFW G+KGDVQK+C+ECTVCQRNKSLSLSPA LLTPLEIP+RIWD ISMDFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PKAAGF+VI VV+D  SKYAHFL LK+PFDA+IVAE+FVKEVVRLHGFP+SIVSDRDK+FLS+FWKELFRLAGTKLNRSTT+HPQTDGQTEVV+RS+EAY
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGERP+EW+KWIHWAEYWYN TYQ+SLGVSPFQAVYGR P PL+ YGDH T+NSTLDEQLKQRD+ALGALKEHLRVAQ+KMK+YADLK+RHVEF E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPEL
        GDMVYLKLRPYRQVS R+R+NEKLSPKYFGPYKV+K+IG VAY+LEL PTA IHPVFHISQLKRAFG+CQNP  L
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPEL

A0A5D3BX34 Transposon Ty3-I Gag-Pol polyprotein1.1e-20199.13Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        PKAAGFEVIFVVLD LSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE
        LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALK+HLRVAQEKMKSYADLKQRHVEFHE
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHE

Query:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKL
        GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYK+
Subjt:  GDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKL

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein5.1e-5031.62Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        ++  K ++++ N + L   I+  YH      H G       + R   W G++  +Q++ + C  CQ NKS +  P   L P+    R W+ +SMDFI  L
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        P+++G+  +FVV+D  SK A  +       A+  A +F + V+   G P+ I++D D IF S  WK+        +  S  + PQTDGQTE  N+++E  
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E
        LRC C   P  WV  I   +  YN     +  ++PF+ V+  +P   PL    +  + +   DE  ++       +KEHL     KMK Y D+K + + E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E

Query:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR
        F  GD+V +K    R  +    K+ KL+P + GP+ V+++ GP  Y+L+ LP +I H     FH+S L++
Subjt:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR

P0CT35 Transposon Tf2-2 polyprotein5.1e-5031.62Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        ++  K ++++ N + L   I+  YH      H G       + R   W G++  +Q++ + C  CQ NKS +  P   L P+    R W+ +SMDFI  L
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        P+++G+  +FVV+D  SK A  +       A+  A +F + V+   G P+ I++D D IF S  WK+        +  S  + PQTDGQTE  N+++E  
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E
        LRC C   P  WV  I   +  YN     +  ++PF+ V+  +P   PL    +  + +   DE  ++       +KEHL     KMK Y D+K + + E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E

Query:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR
        F  GD+V +K    R  +    K+ KL+P + GP+ V+++ GP  Y+L+ LP +I H     FH+S L++
Subjt:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR

P0CT36 Transposon Tf2-3 polyprotein5.1e-5031.62Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        ++  K ++++ N + L   I+  YH      H G       + R   W G++  +Q++ + C  CQ NKS +  P   L P+    R W+ +SMDFI  L
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        P+++G+  +FVV+D  SK A  +       A+  A +F + V+   G P+ I++D D IF S  WK+        +  S  + PQTDGQTE  N+++E  
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E
        LRC C   P  WV  I   +  YN     +  ++PF+ V+  +P   PL    +  + +   DE  ++       +KEHL     KMK Y D+K + + E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E

Query:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR
        F  GD+V +K    R  +    K+ KL+P + GP+ V+++ GP  Y+L+ LP +I H     FH+S L++
Subjt:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR

P0CT41 Transposon Tf2-12 polyprotein5.1e-5031.62Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        ++  K ++++ N + L   I+  YH      H G       + R   W G++  +Q++ + C  CQ NKS +  P   L P+    R W+ +SMDFI  L
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        P+++G+  +FVV+D  SK A  +       A+  A +F + V+   G P+ I++D D IF S  WK+        +  S  + PQTDGQTE  N+++E  
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E
        LRC C   P  WV  I   +  YN     +  ++PF+ V+  +P   PL    +  + +   DE  ++       +KEHL     KMK Y D+K + + E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E

Query:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR
        F  GD+V +K    R  +    K+ KL+P + GP+ V+++ GP  Y+L+ LP +I H     FH+S L++
Subjt:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR

Q9UR07 Transposon Tf2-11 polyprotein5.1e-5031.62Show/hide
Query:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL
        ++  K ++++ N + L   I+  YH      H G       + R   W G++  +Q++ + C  CQ NKS +  P   L P+    R W+ +SMDFI  L
Subjt:  MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGL

Query:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY
        P+++G+  +FVV+D  SK A  +       A+  A +F + V+   G P+ I++D D IF S  WK+        +  S  + PQTDGQTE  N+++E  
Subjt:  PKAAGFEVIFVVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAY

Query:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E
        LRC C   P  WV  I   +  YN     +  ++PF+ V+  +P   PL    +  + +   DE  ++       +KEHL     KMK Y D+K + + E
Subjt:  LRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGRNP--PPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHV-E

Query:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR
        F  GD+V +K    R  +    K+ KL+P + GP+ V+++ GP  Y+L+ LP +I H     FH+S L++
Subjt:  FHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFGPYKVIKRIGPVAYKLELLPTAIIH---PVFHISQLKR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGTATAAGGGAAGATTGGTGATAGCTAACAAATCATCACTTATACCAGCTATCCTGCATACCTATCACAACTCTGTTTTTGGTGGACACTTTGGGTTTCATCG
AACATATAAAAGACTTACTAGAGAGTTATTTTGGCATGGGGTGAAAGGAGATGTGCAGAAACATTGCAAAGAATGTACTGTTTGTCAAAGAAATAAGTCCTTATCACTGT
CACCAGCTAGGTTATTAACTCCTCTAGAGATTCCGACCAGAATTTGGGATGACATTTCGATGGACTTCATTGAAGGACTTCCTAAAGCGGCAGGGTTCGAAGTAATTTTT
GTAGTTCTGGACTGCTTAAGTAAGTATGCCCATTTCTTAACTCTCAAATATCCTTTTGATGCTAAGATCGTAGCTGAACTGTTTGTTAAAGAAGTGGTTAGATTACATGG
TTTTCCAAGATCGATTGTCTCGGATAGGGACAAAATATTTTTGAGTAACTTTTGGAAAGAGTTATTTAGATTGGCTGGAACAAAATTGAACAGAAGCACAACATTCCATC
CTCAAACGGATGGACAGACTGAAGTTGTTAACCGTTCAATGGAGGCTTATTTGCGCTGCTTCTGCGGTGAACGGCCAAGAGAATGGGTTAAGTGGATTCATTGGGCTGAG
TATTGGTATAATACCACATACCAGCGTTCATTAGGAGTTTCTCCTTTTCAGGCGGTTTATGGAAGAAATCCTCCTCCCTTAATCTGTTATGGAGATCATGAAACGTCTAA
TTCAACGTTGGACGAGCAGCTTAAACAGAGAGATGTAGCGTTGGGTGCCTTGAAGGAGCATTTAAGAGTTGCTCAAGAAAAGATGAAGTCTTATGCTGACTTAAAACAGA
GACATGTGGAATTTCATGAGGGAGATATGGTTTATCTGAAGTTGAGACCTTATAGACAGGTGTCTACAAGGAGAAGAAAAAATGAGAAGCTTTCTCCAAAATATTTTGGT
CCTTATAAAGTGATTAAGAGAATTGGGCCAGTAGCTTATAAGTTGGAGTTACTGCCAACTGCTATAATTCATCCTGTTTTTCATATATCACAACTTAAACGAGCTTTTGG
AGAGTGTCAAAATCCTCCAGAGTTAACTCATACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGTATAAGGGAAGATTGGTGATAGCTAACAAATCATCACTTATACCAGCTATCCTGCATACCTATCACAACTCTGTTTTTGGTGGACACTTTGGGTTTCATCG
AACATATAAAAGACTTACTAGAGAGTTATTTTGGCATGGGGTGAAAGGAGATGTGCAGAAACATTGCAAAGAATGTACTGTTTGTCAAAGAAATAAGTCCTTATCACTGT
CACCAGCTAGGTTATTAACTCCTCTAGAGATTCCGACCAGAATTTGGGATGACATTTCGATGGACTTCATTGAAGGACTTCCTAAAGCGGCAGGGTTCGAAGTAATTTTT
GTAGTTCTGGACTGCTTAAGTAAGTATGCCCATTTCTTAACTCTCAAATATCCTTTTGATGCTAAGATCGTAGCTGAACTGTTTGTTAAAGAAGTGGTTAGATTACATGG
TTTTCCAAGATCGATTGTCTCGGATAGGGACAAAATATTTTTGAGTAACTTTTGGAAAGAGTTATTTAGATTGGCTGGAACAAAATTGAACAGAAGCACAACATTCCATC
CTCAAACGGATGGACAGACTGAAGTTGTTAACCGTTCAATGGAGGCTTATTTGCGCTGCTTCTGCGGTGAACGGCCAAGAGAATGGGTTAAGTGGATTCATTGGGCTGAG
TATTGGTATAATACCACATACCAGCGTTCATTAGGAGTTTCTCCTTTTCAGGCGGTTTATGGAAGAAATCCTCCTCCCTTAATCTGTTATGGAGATCATGAAACGTCTAA
TTCAACGTTGGACGAGCAGCTTAAACAGAGAGATGTAGCGTTGGGTGCCTTGAAGGAGCATTTAAGAGTTGCTCAAGAAAAGATGAAGTCTTATGCTGACTTAAAACAGA
GACATGTGGAATTTCATGAGGGAGATATGGTTTATCTGAAGTTGAGACCTTATAGACAGGTGTCTACAAGGAGAAGAAAAAATGAGAAGCTTTCTCCAAAATATTTTGGT
CCTTATAAAGTGATTAAGAGAATTGGGCCAGTAGCTTATAAGTTGGAGTTACTGCCAACTGCTATAATTCATCCTGTTTTTCATATATCACAACTTAAACGAGCTTTTGG
AGAGTGTCAAAATCCTCCAGAGTTAACTCATACATGA
Protein sequenceShow/hide protein sequence
MLQYKGRLVIANKSSLIPAILHTYHNSVFGGHFGFHRTYKRLTRELFWHGVKGDVQKHCKECTVCQRNKSLSLSPARLLTPLEIPTRIWDDISMDFIEGLPKAAGFEVIF
VVLDCLSKYAHFLTLKYPFDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDGQTEVVNRSMEAYLRCFCGERPREWVKWIHWAE
YWYNTTYQRSLGVSPFQAVYGRNPPPLICYGDHETSNSTLDEQLKQRDVALGALKEHLRVAQEKMKSYADLKQRHVEFHEGDMVYLKLRPYRQVSTRRRKNEKLSPKYFG
PYKVIKRIGPVAYKLELLPTAIIHPVFHISQLKRAFGECQNPPELTHT