CuGenDBv2

Gene ID	Cmc02g0045241
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Choline monooxygenase, chloroplastic
Genome location	CMiso1.1chr02:8829439..8829794
RNA-Seq Expression	Cmc02g0045241
Synteny	Cmc02g0045241
Gene Ontology terms	GO:0019285 - glycine betaine biosynthetic process from choline (biological process) GO:0009570 - chloroplast stroma (cellular component) GO:0016020 - membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0019133 - choline monooxygenase activity (molecular function) GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domains	IPR036922 - Rieske [2Fe-2S] iron-sulphur domain superfamily IPR044637 - Aromatic-ring-hydroxylating dioxygenase

Homology

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GenBank top hits

e value

%identity

Alignment

TYK04233.1 choline monooxygenase [Cucumis melo var. makuwa]

6.8e-48

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS+SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG +  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

XP_004139149.1 choline monooxygenase, chloroplastic isoform X1 [Cucumis sativus]

6.2e-41

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MA LTKHIQ+HFFQ PS SFNFH CNHRSP RIS++LSFR+PDSR IEARKLVDDFDP+IPLEKALTPPSSWYIDPSFFALEL+ VFYRGWQAVG +  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

XP_008443631.1 PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Cucumis melo]

6.8e-48

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS+SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG +  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

XP_016899776.1 PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Cucumis melo]

4.4e-47

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS+SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQA+ +L  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

XP_038880722.1 choline monooxygenase, chloroplastic [Benincasa hispida]

2.8e-41

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MATLTKHI  HFFQPPSISFN H CNHRSPSRIS++LSFR+ DS FIEA+KLVD+FDPEIPLEKA+TPPSSWYIDPSF+ALELDRVFYRGWQAVG +  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXX3 Choline monooxygenase, chloroplastic

3.0e-41

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MA LTKHIQ+HFFQ PS SFNFH CNHRSP RIS++LSFR+PDSR IEARKLVDDFDP+IPLEKALTPPSSWYIDPSFFALEL+ VFYRGWQAVG +  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

A0A1S3B9A0 Choline monooxygenase, chloroplastic

3.3e-48

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS+SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG +  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

A0A1S4DUW5 choline monooxygenase, chloroplastic isoform X1

2.1e-47

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS+SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQA+ +L  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

A0A5A7UY48 Choline monooxygenase, chloroplastic

3.3e-48

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS+SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG +  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

A0A5D3BWX2 Choline monooxygenase, chloroplastic

3.3e-48

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL
        MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS+SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG +  L
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSL

SwissProt top hits

e value

%identity

Alignment

O04121 Choline monooxygenase, chloroplastic

1.4e-11

44.16

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Query:  RSPSRISS---------SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG
        R+P++I++         SL+  +P S     + LV +FDP+IP E A TPPSSWY +P+F++ EL+R+FY+GWQ  G
Subjt:  RSPSRISS---------SLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG

O22553 Choline monooxygenase, chloroplastic

1.3e-12

63.04

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Query:  RKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG
        R LV +FDPEIP E ALTPPS+WY +P+F++ EL+R+FY+GWQ  G
Subjt:  RKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG

Q93XE1 Choline monooxygenase, chloroplastic

1.2e-10

41.27

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Query:  ISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG
        I SS++  +  +     ++++ +FDP++P E   TPPS+WY DPS ++ ELDR+F +GWQ  G
Subjt:  ISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG

Q9LKN0 Choline monooxygenase, chloroplastic

5.7e-13

65.22

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Query:  RKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG
        + LV DFDP +P E ALTPPSSWY +P+F+A ELDR+FY+GWQ  G
Subjt:  RKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVG

Q9SZR0 Choline monooxygenase, chloroplastic

3.2e-16

48.51

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS----SSLSFRSPDSRFI--EARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAV
        M TLT    +  F PPS+     + N  S   +S    S   F +P   F   +  KLV +FDP+IPLE+A TPPSSWY DP F++ ELDRVFY GWQAV
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS----SSLSFRSPDSRFI--EARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAV

Query:  G
        G
Subjt:  G

Arabidopsis top hits

e value

%identity

Alignment

AT4G29890.1 choline monooxygenase, putative (CMO-like)

2.3e-17

48.51

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Query:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS----SSLSFRSPDSRFI--EARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAV
        M TLT    +  F PPS+     + N  S   +S    S   F +P   F   +  KLV +FDP+IPLE+A TPPSSWY DP F++ ELDRVFY GWQAV
Subjt:  MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRIS----SSLSFRSPDSRFI--EARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAV

Query:  G
        G
Subjt:  G

Sequences

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CDS sequence

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ATGGCGACTTTGACGAAGCATATCCAAATTCACTTCTTCCAACCTCCTTCCATTTCTTTCAATTTCCATTTCTGTAATCATCGTTCTCCCTCACGAATCTCCTCG
TCTTTATCCTTTCGAAGCCCTGATTCTCGATTCATTGAAGCTCGGAAACTCGTTGATGATTTCGACCCTGAAATTCCATTGGAGAAGGCCCTCACTCCACCCTCC
TCCTGGTATATAGACCCTTCATTTTTCGCTCTCGAGCTCGATCGTGTCTTCTACAGAGGATGGCAGGCTGTAGGTTCGCTTCCATCTCTAAATTTTTTTGTTCTT
TTTTCTTACTCTCATGTTTGTGAGTGA

mRNA sequence

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CTGTTGCTGTTGCAATGGCGACTTTGACGAAGCATATCCAAATTCACTTCTTCCAACCTCCTTCCATTTCTTTCAATTTCCATTTCTGTAATCATCGTTCTCCCT
CACGAATCTCCTCGTCTTTATCCTTTCGAAGCCCTGATTCTCGATTCATTGAAGCTCGGAAACTCGTTGATGATTTCGACCCTGAAATTCCATTGGAGAAGGCCC
TCACTCCACCCTCCTCCTGGTATATAGACCCTTCATTTTTCGCTCTCGAGCTCGATCGTGTCTTCTACAGAGGATGGCAGGCTGTAGGTTCGCTTCCATCTCTAA
ATTTTTTTGTTCTTTTTTCTTACTCTCATGTTTGTGAGTGA

Protein sequence

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MATLTKHIQIHFFQPPSISFNFHFCNHRSPSRISSSLSFRSPDSRFIEARKLVDDFDPEIPLEKALTPPSSWYIDPSFFALELDRVFYRGWQAVGSLPSLNFFVL
FSYSHVCE

Cmc02g0045241 (gene) of Melon (Charmono) v1.1 genome