CuGenDBv2

Gene ID	Cmc02g0045441
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr02:9272990..9273968
RNA-Seq Expression	Cmc02g0045441
Synteny	Cmc02g0045441
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

5.6e-169

97.67

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVD+LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY +CCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

KAA0040699.1 pol protein [Cucumis melo var. makuwa]

3.6e-168

97.33

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVD+LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMG+RLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY KCCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFEVGDKVFLKVAPMRGVLRFERR KLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFH+SMLRKYVPDPSHVVDYEPLEIDENLSY EQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

7.3e-169

97.33

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVD+LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY +CCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

KAA0061618.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

9.5e-169

97.33

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVD+LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        +NQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFEVGD VFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP+PSHVVDYEPLEIDENLSY EQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

KAA0062245.1 pol protein [Cucumis melo var. makuwa]

2.8e-168

97.33

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGF+VIWVVVD+LTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY KCC+SPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGP+AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7THF3 Reverse transcriptase

1.8e-168

97.33

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVD+LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMG+RLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY KCCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFEVGDKVFLKVAPMRGVLRFERR KLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFH+SMLRKYVPDPSHVVDYEPLEIDENLSY EQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

A0A5A7U7V9 Reverse transcriptase

3.5e-169

97.33

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVD+LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY +CCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

A0A5A7V223 Reverse transcriptase

4.6e-169

97.33

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVD+LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        +NQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFEVGD VFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP+PSHVVDYEPLEIDENLSY EQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

A0A5A7V8L8 Pol protein

1.3e-168

97.33

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGF+VIWVVVD+LTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY KCC+SPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGP+AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

Q84KB0 Pol protein

2.7e-169

97.67

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVD+LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFW GLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY +CCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVE
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVE

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.7e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVD+ +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ W          + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E    T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein

3.7e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVD+ +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ W          + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E    T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein

3.7e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVD+ +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ W          + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E    T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein

3.7e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVD+ +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ W          + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E    T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein

3.7e-38

34.42

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Query:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVD+ +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ W          + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E    T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD-KCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTCATTACAGGACTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAAACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCC
ACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCC
AAATTCTGGATGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTA
GAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGC
ATGGCACCATTTGAGGCCTTGTACGACAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTGCATTCTACT
AACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTCGAATTTGAGGTAGGGGAC
AAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTACGATTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATT
GGCCCTGTAGCTTATCGCTTGGCGTTGCCACCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTA
GTGGATTACGAGCCACTGGAGATTGATGAAAACTTGAGCTATGCTGAACAACCCGTTGAGTCTTATGGCGGAATCACCGGGTAG

mRNA sequence

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Protein sequence

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MDFITGLPRTLRGFTVIWVVVDKLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWMGLQTAMGTRLDFSTAFHPQTDGQTERLNQVL
EDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVHSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGD
KVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVESYGGITG

Cmc02g0045441 (gene) of Melon (Charmono) v1.1 genome