; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0045671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0045671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr02:9722988..9723900
RNA-Seq ExpressionCmc02g0045671
SyntenyCmc02g0045671
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]5.4e-9664.33Show/hide
Query:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ
        +P+++ +  H       AFITSL+STSIPN++HEALSHPGW+NAMIEEMTAL DNGTWDLVSRP GKKAIGCKWVF++K+N +GTV R KARLVAK YAQ
Subjt:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ

Query:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----
         YG DYSDTFS V KLTSIRLFLSMAAT+ WSLHQL+IKN FLHGDLQE+VY+EQPP       S K+                WF   S+ +VC     
Subjt:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----

Query:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
                                     GNDALGISSLKTFLQGQF+TK LGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKP+GTPMMPN
Subjt:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

XP_031744754.1 uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]5.4e-9664.33Show/hide
Query:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ
        +P+++ +  H       AFITSL+STSIPN++HEALSHPGW+NAMIEEMTAL DNGTWDLVSRP GKKAIGCKWVF++K+N +GTV R KARLVAK YAQ
Subjt:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ

Query:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----
         YG DYSDTFS V KLTSIRLFLSMAAT+ WSLHQL+IKN FLHGDLQE+VY+EQPP       S K+                WF   S+ +VC     
Subjt:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----

Query:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
                                     GNDALGISSLKTFLQGQF+TK LGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKP+GTPMMPN
Subjt:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

XP_031744755.1 uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]5.4e-9664.33Show/hide
Query:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ
        +P+++ +  H       AFITSL+STSIPN++HEALSHPGW+NAMIEEMTAL DNGTWDLVSRP GKKAIGCKWVF++K+N +GTV R KARLVAK YAQ
Subjt:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ

Query:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----
         YG DYSDTFS V KLTSIRLFLSMAAT+ WSLHQL+IKN FLHGDLQE+VY+EQPP       S K+                WF   S+ +VC     
Subjt:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----

Query:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
                                     GNDALGISSLKTFLQGQF+TK LGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKP+GTPMMPN
Subjt:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

XP_031744756.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus]5.4e-9664.33Show/hide
Query:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ
        +P+++ +  H       AFITSL+STSIPN++HEALSHPGW+NAMIEEMTAL DNGTWDLVSRP GKKAIGCKWVF++K+N +GTV R KARLVAK YAQ
Subjt:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ

Query:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----
         YG DYSDTFS V KLTSIRLFLSMAAT+ WSLHQL+IKN FLHGDLQE+VY+EQPP       S K+                WF   S+ +VC     
Subjt:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----

Query:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
                                     GNDALGISSLKTFLQGQF+TK LGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKP+GTPMMPN
Subjt:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

XP_031744758.1 uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]5.4e-9664.33Show/hide
Query:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ
        +P+++ +  H       AFITSL+STSIPN++HEALSHPGW+NAMIEEMTAL DNGTWDLVSRP GKKAIGCKWVF++K+N +GTV R KARLVAK YAQ
Subjt:  FPITNCLPQH-------AFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQ

Query:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----
         YG DYSDTFS V KLTSIRLFLSMAAT+ WSLHQL+IKN FLHGDLQE+VY+EQPP       S K+                WF   S+ +VC     
Subjt:  TYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP------SSSKIF--------------VWFETESKCVVC-----

Query:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
                                     GNDALGISSLKTFLQGQF+TK LGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKP+GTPMMPN
Subjt:  -----------------------------GNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

TrEMBL top hitse value%identityAlignment
A0A438GAQ9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-7859.84Show/hide
Query:  ITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSI
        I S+DS S+P T+ EAL+HPGW+NAM+EE+ AL DN TW LV  P GKK +GCKWVF++KVN +G+V R KARLVA+ YAQTYG+DYSDTFS V KL S+
Subjt:  ITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSI

Query:  RLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP----------------------SSSKIFVWFETESKCVVCGNDALGISSLKTFLQGQFHTKY
        RLF+S+AA+  W +HQL+IKN FLHGDL+E+VYLEQPP                      S++ I +        V+ GND  GIS LKTF+  +FHTK 
Subjt:  RLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP----------------------SSSKIFVWFETESKCVVCGNDALGISSLKTFLQGQFHTKY

Query:  LGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
        LG+LKYFLGIEV RSKKG++LSQRKYVLDLL ETGK+ AKP  TPM+PN
Subjt:  LGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

A0A438GTM0 Retrovirus-related Pol polyprotein from transposon RE11.3e-7657.25Show/hide
Query:  ITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSI
        + S+DS S+P T+ EAL+HPGW+NAM+EE+ AL DN TW+LV  P GKK +GCKWVF++KV+ + +V R KARLVA+ YAQTYG+DYSDTFS V KL S+
Subjt:  ITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSI

Query:  RLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP----------------------------SSSKIFVWFETESKCVVCGNDALGISSLKTFLQG
        RLF+S+AA+  W +HQL+IKN FLHGDL+E+VYLEQPP                            S++ I +        V+ GND  GIS LKTF+  
Subjt:  RLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP----------------------------SSSKIFVWFETESKCVVCGNDALGISSLKTFLQG

Query:  QFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
        +FHTK LG+LKYFLGIEV RSKKG++LSQRKYVLDLL ETGK+ AKP  TPM+PN
Subjt:  QFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

A0A438JIH0 Retrovirus-related Pol polyprotein from transposon RE17.1e-7858.57Show/hide
Query:  HAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKL
        +  + S+DS S+P T+ EAL+HPGW+NAM+ E+ AL DN TW LV  P GKK +GCKWVF++KVN +G+V R KARLVA+ YAQTYG+DYSDTFS V KL
Subjt:  HAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKL

Query:  TSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP---------------------SSSKIFVWFETESKCVVCGNDALGISSLKTFLQGQFHT
         S+RLF+S+AA+  W +HQL+IKN FLHGDL+E+VYLEQPP                     S++ I +        V+ GND  GIS LKTF+  +FHT
Subjt:  TSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP---------------------SSSKIFVWFETESKCVVCGNDALGISSLKTFLQGQFHT

Query:  KYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
        K LG+LKYFLGIEV RSKKG++LSQRKYVLDLL ETGK+ AKP  TPM+PN
Subjt:  KYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

A0A5A7T406 Copia protein6.4e-8795.18Show/hide
Query:  STSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLS
        S  +P  + +ALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLS
Subjt:  STSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLS

Query:  MAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSSKIFVWFETESKCVVCGNDALGISSLKTFLQ
        MAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSSKIFVWFETESKCVVCGNDALGISSLKTFLQ
Subjt:  MAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSSKIFVWFETESKCVVCGNDALGISSLKTFLQ

A0A5D3E5M8 Copia protein9.3e-8694.58Show/hide
Query:  STSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLS
        S  +P  + +ALSHPGWRNAMIEEMTAL DNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLS
Subjt:  STSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLS

Query:  MAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSSKIFVWFETESKCVVCGNDALGISSLKTFLQ
        MAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSSKIFVWFETESKCVVCGNDALGISSLKTFLQ
Subjt:  MAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSSKIFVWFETESKCVVCGNDALGISSLKTFLQ

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.5e-2727.84Show/hide
Query:  IPNTIHEAL---SHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLS
        +PN+  E         W  A+  E+ A   N TW +  RP  K  +  +WVFS+K N  G   R KARLVA+ + Q Y IDY +TF+ V +++S R  LS
Subjt:  IPNTIHEAL---SHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLS

Query:  MAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSS------------------KIFVWFE--------------TESKC--------------------
        +   +N  +HQ+++K  FL+G L+E++Y+  P   S                      WFE              +  +C                    
Subjt:  MAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSS------------------KIFVWFE--------------TESKC--------------------

Query:  --VVCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPM
          V+   D   +++ K +L  +F    L ++K+F+GI +   +  IYLSQ  YV  +LS+          TP+
Subjt:  --VVCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPM

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-3234.55Show/hide
Query:  PNTIHEALSHP---GWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLSM
        P ++ E LSHP       AM EEM +L  NGT+ LV  P GK+ + CKWVF LK + +  + R KARLV K + Q  GID+ + FS VVK+TSIR  LS+
Subjt:  PNTIHEALSHP---GWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLSM

Query:  AATHNWSLHQLNIKNVFLHGDLQEKVYLEQP---------------------------------PSSSKIFVWFETES-KCV------------------
        AA+ +  + QL++K  FLHGDL+E++Y+EQP                                  S  K   + +T S  CV                  
Subjt:  AATHNWSLHQLNIKNVFLHGDLQEKVYLEQP---------------------------------PSSSKIFVWFETES-KCV------------------

Query:  ---VCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSK--KGIYLSQRKYVLDLLSETGKLGAKPNGTPM
           + G D   I+ LK  L   F  K LG  +  LG++++R +  + ++LSQ KY+  +L       AKP  TP+
Subjt:  ---VCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSK--KGIYLSQRKYVLDLLSETGKLGAKPNGTPM

P92520 Uncharacterized mitochondrial protein AtMg008204.2e-1941.96Show/hide
Query:  PQHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVV
        P+++   +      P ++  AL  PGW  AM EE+ AL  N TW LV  P+ +  +GCKWVF  K++++GT+ R KARLVAK + Q  GI + +T+S VV
Subjt:  PQHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVV

Query:  KLTSIRLFLSMA
        +  +IR  L++A
Subjt:  KLTSIRLFLSMA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.0e-4135.89Show/hide
Query:  PQHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAI-GCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLV
        P+++   SL + S P T  +AL    WRNAM  E+ A   N TWDLV  P     I GC+W+F+ K N++G++ R KARLVAK Y Q  G+DY++TFS V
Subjt:  PQHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAI-GCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLV

Query:  VKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP---------------------------------------------SSSKIFVWFET
        +K TSIR+ L +A   +W + QL++ N FL G L + VY+ QPP                                             S + +FV    
Subjt:  VKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP---------------------------------------------SSSKIFVWFET

Query:  ES---------KCVVCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
        +S           ++ GND   + +    L  +F  K   +L YFLGIE  R   G++LSQR+Y+LDLL+ T  + AKP  TPM P+
Subjt:  ES---------KCVVCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.7e-4135.69Show/hide
Query:  QHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAI-GCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVV
        ++++ TSL + S P T  +A+    WR AM  E+ A   N TWDLV  P     I GC+W+F+ K N++G++ R KARLVAK Y Q  G+DY++TFS V+
Subjt:  QHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAI-GCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVV

Query:  KLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP---------------------------------------------SSSKIFVWFETE
        K TSIR+ L +A   +W + QL++ N FL G L ++VY+ QPP                                             S + +FV     
Subjt:  KLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP---------------------------------------------SSSKIFVWFETE

Query:  S---------KCVVCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPM
        S           ++ GND + +      L  +F  K    L YFLGIE  R  +G++LSQR+Y LDLL+ T  L AKP  TPM
Subjt:  S---------KCVVCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPM

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.4e-4936.81Show/hide
Query:  HAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKL
        H+F+  +     P+T +EA     W  AM +E+ A+    TW++ + P  KK IGCKWV+ +K N++GT+ R KARLVAK Y Q  GID+ +TFS V KL
Subjt:  HAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVVKL

Query:  TSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP---------------------------SSSKIFVWFETE--------------------
        TS++L L+++A +N++LHQL+I N FL+GDL E++Y++ PP                           +S + F+ F                       
Subjt:  TSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPP---------------------------SSSKIFVWFETE--------------------

Query:  -----------SKCVVCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN
                      ++C N+   +  LK+ L+  F  + LG LKYFLG+E+ RS  GI + QRKY LDLL ETG LG KP+  PM P+
Subjt:  -----------SKCVVCGNDALGISSLKTFLQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPN

ATMG00810.1 DNA/RNA polymerases superfamily protein4.2e-0641.82Show/hide
Query:  LQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPM
        L   F  K LG + YFLGI++     G++LSQ KY   +L+  G L  KP  TP+
Subjt:  LQGQFHTKYLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPM

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)3.0e-2041.96Show/hide
Query:  PQHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVV
        P+++   +      P ++  AL  PGW  AM EE+ AL  N TW LV  P+ +  +GCKWVF  K++++GT+ R KARLVAK + Q  GI + +T+S VV
Subjt:  PQHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGIDYSDTFSLVV

Query:  KLTSIRLFLSMA
        +  +IR  L++A
Subjt:  KLTSIRLFLSMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTCCCATTGCTCTTCGCAAAGGTAAACCCAAGTGTACTTACCTTGTTTCTTCTTTTGTTTCCTATCACCAATTGTCTCCCCCAACATGCTTTTATTACA
TCTCTGGACTCCACATCTATTCCTAACACTATTCATGAAGCTTTATCTCATCCTGGCTGGCGAAATGCAATGATTGAGGAGATGACTGCTTTATATGATAATGGT
ACTTGGGATTTGGTATCTCGTCCTATAGGAAAGAAGGCTATTGGTTGTAAATGGGTGTTTTCTCTTAAGGTGAATACTAATGGAACAGTGCCTCGATCGAAAGCT
CGTCTTGTTGCCAAAGATTATGCTCAGACCTATGGTATTGATTATTCAGATACATTTTCTCTAGTTGTCAAATTAACTTCCATCCGCCTATTTCTTTCCATGGCT
GCTACCCATAACTGGTCTTTGCATCAACTTAACATTAAGAATGTTTTTCTGCATGGTGATCTTCAAGAGAAAGTTTATCTGGAGCAACCACCTAGTTCTTCGAAA
ATCTTTGTCTGGTTTGAAACAGAGTCCAAATGCGTGGTTTGCGGAAATGATGCATTGGGTATTTCATCTCTCAAAACTTTCCTTCAAGGTCAATTTCACACAAAA
TATTTGGGTCAATTGAAATATTTTTTGGGCATTGAAGTAATGAGAAGTAAGAAAGGTATTTATTTGTCTCAACGAAAATATGTACTTGATTTGTTGTCGGAGACA
GGAAAATTAGGAGCCAAACCAAATGGTACTCCGATGATGCCGAATCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTTCCCATTGCTCTTCGCAAAGGTAAACCCAAGTGTACTTACCTTGTTTCTTCTTTTGTTTCCTATCACCAATTGTCTCCCCCAACATGCTTTTATTACA
TCTCTGGACTCCACATCTATTCCTAACACTATTCATGAAGCTTTATCTCATCCTGGCTGGCGAAATGCAATGATTGAGGAGATGACTGCTTTATATGATAATGGT
ACTTGGGATTTGGTATCTCGTCCTATAGGAAAGAAGGCTATTGGTTGTAAATGGGTGTTTTCTCTTAAGGTGAATACTAATGGAACAGTGCCTCGATCGAAAGCT
CGTCTTGTTGCCAAAGATTATGCTCAGACCTATGGTATTGATTATTCAGATACATTTTCTCTAGTTGTCAAATTAACTTCCATCCGCCTATTTCTTTCCATGGCT
GCTACCCATAACTGGTCTTTGCATCAACTTAACATTAAGAATGTTTTTCTGCATGGTGATCTTCAAGAGAAAGTTTATCTGGAGCAACCACCTAGTTCTTCGAAA
ATCTTTGTCTGGTTTGAAACAGAGTCCAAATGCGTGGTTTGCGGAAATGATGCATTGGGTATTTCATCTCTCAAAACTTTCCTTCAAGGTCAATTTCACACAAAA
TATTTGGGTCAATTGAAATATTTTTTGGGCATTGAAGTAATGAGAAGTAAGAAAGGTATTTATTTGTCTCAACGAAAATATGTACTTGATTTGTTGTCGGAGACA
GGAAAATTAGGAGCCAAACCAAATGGTACTCCGATGATGCCGAATCATTAA
Protein sequenceShow/hide protein sequence
MIFPLLFAKVNPSVLTLFLLLFPITNCLPQHAFITSLDSTSIPNTIHEALSHPGWRNAMIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKA
RLVAKDYAQTYGIDYSDTFSLVVKLTSIRLFLSMAATHNWSLHQLNIKNVFLHGDLQEKVYLEQPPSSSKIFVWFETESKCVVCGNDALGISSLKTFLQGQFHTK
YLGQLKYFLGIEVMRSKKGIYLSQRKYVLDLLSETGKLGAKPNGTPMMPNH