; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0045971 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0045971
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr02:10467648..10468334
RNA-Seq ExpressionCmc02g0045971
SyntenyCmc02g0045971
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038269.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.7e-12799.56Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPK
        MKDLGSLNYFLGLEVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPN+YLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPK
Subjt:  MKDLGSLNYFLGLEVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPK

Query:  TIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLAD
        TIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLAD
Subjt:  TIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLAD

Query:  MSVLQQGPTLLHCDNRSAIQIAHNNVFH
        MSVLQQGPTLLHCDNRSAIQIAHNNVFH
Subjt:  MSVLQQGPTLLHCDNRSAIQIAHNNVFH

KAA0052097.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.1e-10888.21Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        MKDLGSLNYFLGLEVSR +DGY LSQAKYA DLL   GIT+SNTASTPLDPNV+LTPYDGVPLEDVSLYRQLVGSLIYLTV+ PDIA+VVH V+QFMAAP
Subjt:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
        +TIHFTVVLRILRY+KGTLGH LQFSSQSSLVLSGY +ADWAGDPTDR STTGYC YLGDSLISW SKKQSVVSRSST+SEYRALADAT ELLWLRWLLA
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        DM V QQGPTLLHCDNRSAIQIAHN+VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

KAA0054647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.0e-10887.77Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        MKDLGSLNYFLGLEVSR +DGY LSQAKY  DLL   GIT+SNTASTPLDPNV+LTPYDGVPLEDVSLYRQLVGSLIYLTV+ PDIA+ VH V+QFMAAP
Subjt:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
        +TIHFT VLRILRY+KGTLGH LQFSSQSSLVLSGY DADWAGDPTDRRSTTGYC YLGDSLISW SKKQSVVSRSST+SEYRALADAT ELLWLRWLLA
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        DM V QQGPTLLHCDNRSAIQIAHN+VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

TYK10332.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-11089.52Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        M+DLGSLNYFLGLEVSR +DGY LSQAKYA DLL   GIT+SNTASTPLDPNV+LTPYDGVPLE+VSLYRQLVGSLIYLTV+HPDIA+VVH V+QFMAAP
Subjt:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
        +TIHFTVVLRILRY+KGTLGH LQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYC YLGDSLISW SKKQSVVSRSST+SEYRALADATTELLWLRWLLA
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        DM V QQGPTLLHCDNRSAIQIAHN+VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

TYK19815.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.4e-11195.81Show/hide
Query:  EVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPKTIHFTVVLRILRY
        + SRHTDGYLSQAKYALDLLVCLGIT+SNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDI  VVHNVNQFMAAPKTIHFT+VLRILRY
Subjt:  EVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPKTIHFTVVLRILRY

Query:  IKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLADMSVLQQGPTLLHC
        IKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYC YLGDSLISW SKKQSVVS SSTKSEYRALADATTELLWLRWLLADMSVLQQGPTLLHC
Subjt:  IKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLADMSVLQQGPTLLHC

Query:  DNRSAIQIAHNNVFH
        DNRSAIQIAHNNVFH
Subjt:  DNRSAIQIAHNNVFH

TrEMBL top hitse value%identityAlignment
A0A5A7TA88 Putative mitochondrial protein3.2e-12799.56Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPK
        MKDLGSLNYFLGLEVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPN+YLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPK
Subjt:  MKDLGSLNYFLGLEVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPK

Query:  TIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLAD
        TIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLAD
Subjt:  TIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLAD

Query:  MSVLQQGPTLLHCDNRSAIQIAHNNVFH
        MSVLQQGPTLLHCDNRSAIQIAHNNVFH
Subjt:  MSVLQQGPTLLHCDNRSAIQIAHNNVFH

A0A5A7UCC7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-10888.21Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        MKDLGSLNYFLGLEVSR +DGY LSQAKYA DLL   GIT+SNTASTPLDPNV+LTPYDGVPLEDVSLYRQLVGSLIYLTV+ PDIA+VVH V+QFMAAP
Subjt:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
        +TIHFTVVLRILRY+KGTLGH LQFSSQSSLVLSGY +ADWAGDPTDR STTGYC YLGDSLISW SKKQSVVSRSST+SEYRALADAT ELLWLRWLLA
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        DM V QQGPTLLHCDNRSAIQIAHN+VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

A0A5A7UJ79 Retrovirus-related Pol polyprotein from transposon TNT 1-943.4e-10887.77Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        MKDLGSLNYFLGLEVSR +DGY LSQAKY  DLL   GIT+SNTASTPLDPNV+LTPYDGVPLEDVSLYRQLVGSLIYLTV+ PDIA+ VH V+QFMAAP
Subjt:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
        +TIHFT VLRILRY+KGTLGH LQFSSQSSLVLSGY DADWAGDPTDRRSTTGYC YLGDSLISW SKKQSVVSRSST+SEYRALADAT ELLWLRWLLA
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        DM V QQGPTLLHCDNRSAIQIAHN+VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

A0A5D3CGF8 Retrovirus-related Pol polyprotein from transposon TNT 1-945.6e-11189.52Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        M+DLGSLNYFLGLEVSR +DGY LSQAKYA DLL   GIT+SNTASTPLDPNV+LTPYDGVPLE+VSLYRQLVGSLIYLTV+HPDIA+VVH V+QFMAAP
Subjt:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
        +TIHFTVVLRILRY+KGTLGH LQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYC YLGDSLISW SKKQSVVSRSST+SEYRALADATTELLWLRWLLA
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        DM V QQGPTLLHCDNRSAIQIAHN+VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

A0A5D3D8B3 Putative mitochondrial protein6.6e-11295.81Show/hide
Query:  EVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPKTIHFTVVLRILRY
        + SRHTDGYLSQAKYALDLLVCLGIT+SNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDI  VVHNVNQFMAAPKTIHFT+VLRILRY
Subjt:  EVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPKTIHFTVVLRILRY

Query:  IKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLADMSVLQQGPTLLHC
        IKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYC YLGDSLISW SKKQSVVS SSTKSEYRALADATTELLWLRWLLADMSVLQQGPTLLHC
Subjt:  IKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLADMSVLQQGPTLLHC

Query:  DNRSAIQIAHNNVFH
        DNRSAIQIAHNNVFH
Subjt:  DNRSAIQIAHNNVFH

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.3e-3134.19Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSL-YRQLVGSLIYLTV-SHPDIAHVVHNVNQFMA
        M DL  + +F+G+ +    D  YLSQ+ Y   +L    + N N  STPL   +     +    ED +   R L+G L+Y+ + + PD+   V+ ++++ +
Subjt:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSL-YRQLVGSLIYLTV-SHPDIAHVVHNVNQFMA

Query:  APKTIHFTVVLRILRYIKGTLGHELQFSSQSSL--VLSGYFDADWAGDPTDRRSTTGYCLYLGD-SLISWCSKKQSVVSRSSTKSEYRALADATTELLWL
           +  +  + R+LRY+KGT+  +L F    +    + GY D+DWAG   DR+STTGY   + D +LI W +K+Q+ V+ SST++EY AL +A  E LWL
Subjt:  APKTIHFTVVLRILRYIKGTLGHELQFSSQSSL--VLSGYFDADWAGDPTDRRSTTGYCLYLGD-SLISWCSKKQSVVSRSSTKSEYRALADATTELLWL

Query:  RWLLADMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        ++LL  +++  + P  ++ DN+  I IA+N   H
Subjt:  RWLLADMSVLQQGPTLLHCDNRSAIQIAHNNVFH

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-3137.24Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDG---YLSQAKYALDLLVCLGITNSNTASTPLDPNVYL-------TPYDGVPLEDVSLYRQLVGSLIYLTV-SHPDIAHVV
        MKDLG     LG+++ R       +LSQ KY   +L    + N+   STPL  ++ L       T  +   +  V  Y   VGSL+Y  V + PDIAH V
Subjt:  MKDLGSLNYFLGLEVSRHTDG---YLSQAKYALDLLVCLGITNSNTASTPLDPNVYL-------TPYDGVPLEDVSLYRQLVGSLIYLTV-SHPDIAHVV

Query:  HNVNQFMAAPKTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATT
          V++F+  P   H+  V  ILRY++GT G  L F   S  +L GY DAD AGD  +R+S+TGY        ISW SK Q  V+ S+T++EY A  +   
Subjt:  HNVNQFMAAPKTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATT

Query:  ELLWLRWLLADMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        E++WL+  L ++  L Q   +++CD++SAI ++ N+++H
Subjt:  ELLWLRWLLADMSVLQQGPTLLHCDNRSAIQIAHNNVFH

P92519 Uncharacterized mitochondrial protein AtMg008103.2e-3944.85Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        MKDLG ++YFLG+++  H  G +LSQ KYA  +L   G+ +    STPL P    +        D S +R +VG+L YLT++ PDI++ V+ V Q M  P
Subjt:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLW
            F ++ R+LRY+KGT+ H L     S L +  + D+DWAG  + RRSTTG+C +LG ++ISW +K+Q  VSRSST++EYRALA    EL W
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-4642.79Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        +KD   L+YFLG+E  R   G +LSQ +Y LDLL    +  +   +TP+ P+  L+ Y G  L D + YR +VGSL YL  + PDI++ V+ ++QFM  P
Subjt:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
           H   + RILRY+ GT  H +     ++L L  Y DADWAGD  D  ST GY +YLG   ISW SKKQ  V RSST++EYR++A+ ++E+ W+  LL 
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        ++ +    P +++CDN  A  +  N VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.9e-4541.05Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        +K+   L+YFLG+E  R   G +LSQ +Y LDLL    +  +   +TP+  +  LT + G  L D + YR +VGSL YL  + PD+++ V+ ++Q+M  P
Subjt:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
           H+  + R+LRY+ GT  H +     ++L L  Y DADWAGD  D  ST GY +YLG   ISW SKKQ  V RSST++EYR++A+ ++EL W+  LL 
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        ++ +    P +++CDN  A  +  N VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.7e-5446.72Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        ++DLG L YFLGLE++R   G  + Q KYALDLL   G+     +S P+DP+V  + + G    D   YR+L+G L+YL ++  DI+  V+ ++QF  AP
Subjt:  MKDLGSLNYFLGLEVSRHTDGY-LSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA
        +  H   V++IL YIKGT+G  L +SSQ+ + L  + DA +      RRST GYC++LG SLISW SKKQ VVS+SS ++EYRAL+ AT E++WL     
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLA

Query:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH
        ++ +    PTLL CDN +AI IA N VFH
Subjt:  DMSVLQQGPTLLHCDNRSAIQIAHNNVFH

ATMG00240.1 Gag-Pol-related retrotransposon family protein1.3e-1441.77Show/hide
Query:  IYLTVSHPDIAHVVHNVNQFMAAPKTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYC
        +YLT++ PD+   V+ ++QF +A +T     V ++L Y+KGT+G  L +S+ S L L  + D+DWA  P  RRS TG+C
Subjt:  IYLTVSHPDIAHVVHNVNQFMAAPKTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYC

ATMG00810.1 DNA/RNA polymerases superfamily protein2.3e-4044.85Show/hide
Query:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP
        MKDLG ++YFLG+++  H  G +LSQ KYA  +L   G+ +    STPL P    +        D S +R +VG+L YLT++ PDI++ V+ V Q M  P
Subjt:  MKDLGSLNYFLGLEVSRHTDG-YLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAP

Query:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLW
            F ++ R+LRY+KGT+ H L     S L +  + D+DWAG  + RRSTTG+C +LG ++ISW +K+Q  VSRSST++EYRALA    EL W
Subjt:  KTIHFTVVLRILRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGACCTTGGTTCTCTCAATTACTTTCTTGGCCTTGAAGTCTCTCGGCACACGGATGGGTATTTATCTCAAGCCAAATATGCCTTGGATCTCTTAGTCTGCTTAGG
AATTACTAACTCTAACACGGCTTCGACGCCATTAGATCCCAATGTTTATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTAAGTCTGTATCGACAACTTGTTGGCA
GTCTCATCTATCTAACAGTGAGTCATCCAGACATTGCACATGTTGTTCATAATGTCAACCAGTTTATGGCTGCTCCTAAAACCATTCATTTTACTGTTGTGTTACGTATT
CTTCGCTATATCAAGGGAACCTTGGGGCATGAACTTCAGTTTTCTTCTCAATCCTCTCTCGTATTATCTGGCTACTTTGATGCAGATTGGGCTGGGGATCCCACTGATCG
GCGTTCTACAACAGGTTACTGTTTGTACTTAGGCGATTCTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCCAGTACTAAATCAGAATATCGTGCTC
TTGCTGATGCTACCACTGAACTCCTATGGCTTCGTTGGCTCCTTGCTGATATGAGTGTTCTCCAGCAGGGTCCCACTCTCCTTCATTGTGATAATCGTAGTGCCATCCAG
ATTGCCCACAATAATGTTTTCCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGACCTTGGTTCTCTCAATTACTTTCTTGGCCTTGAAGTCTCTCGGCACACGGATGGGTATTTATCTCAAGCCAAATATGCCTTGGATCTCTTAGTCTGCTTAGG
AATTACTAACTCTAACACGGCTTCGACGCCATTAGATCCCAATGTTTATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTAAGTCTGTATCGACAACTTGTTGGCA
GTCTCATCTATCTAACAGTGAGTCATCCAGACATTGCACATGTTGTTCATAATGTCAACCAGTTTATGGCTGCTCCTAAAACCATTCATTTTACTGTTGTGTTACGTATT
CTTCGCTATATCAAGGGAACCTTGGGGCATGAACTTCAGTTTTCTTCTCAATCCTCTCTCGTATTATCTGGCTACTTTGATGCAGATTGGGCTGGGGATCCCACTGATCG
GCGTTCTACAACAGGTTACTGTTTGTACTTAGGCGATTCTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCCAGTACTAAATCAGAATATCGTGCTC
TTGCTGATGCTACCACTGAACTCCTATGGCTTCGTTGGCTCCTTGCTGATATGAGTGTTCTCCAGCAGGGTCCCACTCTCCTTCATTGTGATAATCGTAGTGCCATCCAG
ATTGCCCACAATAATGTTTTCCATTAG
Protein sequenceShow/hide protein sequence
MKDLGSLNYFLGLEVSRHTDGYLSQAKYALDLLVCLGITNSNTASTPLDPNVYLTPYDGVPLEDVSLYRQLVGSLIYLTVSHPDIAHVVHNVNQFMAAPKTIHFTVVLRI
LRYIKGTLGHELQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCLYLGDSLISWCSKKQSVVSRSSTKSEYRALADATTELLWLRWLLADMSVLQQGPTLLHCDNRSAIQ
IAHNNVFH