| GenBank top hits | e value | %identity | Alignment |
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 1.8e-104 | 77.78 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
+VS E V DL L+F +RY+IL++VLYVP MKRNLI I+CILE +Y ISFE+NE FI KGIQI +I ENNLYKLRPTRAN LNTEMFRT ETQ+K+QK
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
SSNAYLWHLRL HINLNRI RLVKSG+L++LEDNSLPP ES LEGKMTKRSFTGKG RAK+PLE VHSD CGPMNVKARGGYEY ISFID +SRYGHVY
Subjt: FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
Query: LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
L+HHKS+SFEKFKEYK EVENE+GKTIK LRSDRG EY+D +FQD LIE GI
Subjt: LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 2.8e-89 | 66.54 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
++S V D KL+FGN+++ L N+ VP++KRNL+ +SC++E MY I+F +NEAFI+ G+ I + ENNLY LRP A LN EMFRTA TQ+KRQ+
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
S +N YLWHLRL HINL+RIGRLVK+GLL++L+D SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKARGG+EY ISFID YSRYG+
Subjt: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
Query: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
+YL+ HKS++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa] | 4.4e-87 | 65.35 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
++S V D KL+FGN+++ L N+ VP++KRNL+ +SC++E MY I+F +NEAFI+ G+ I + ENNLY LRP A LN EMFRTA TQ+KRQ+
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
S +N YLWHLRL HINL+RIGRLVK GLL++L+D SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKARG +EY ISFID YSRYG+
Subjt: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
Query: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
+YL+ HKS++ EKFKEYKTEVEN L K IKI RSDRG EY+DL FQD +IEHGI
Subjt: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| KAA0050872.1 gag/pol protein [Cucumis melo var. makuwa] | 4.9e-86 | 70 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
MVS + V DLKL+F +RYII +NVLY PQMKRNLI ISC+LEQMYRISFEINEAFI FR A+TQ+KRQK
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
S NA+LWHLRL HINLN IGRLVKSGLLS+LEDNSLPP +S LEGKMT+RSFT KG RAK PLE VHSD CGPMNVKARGGY+Y ISFID YSRYGHVY
Subjt: FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
Query: LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEH
LI +K DSFEKFKEYK EVENE GKTIK RSDRG EY+DLRFQD LIEH
Subjt: LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEH
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| KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa] | 2.6e-87 | 66.14 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
++S V D KL+FGN+++ L N+ VP++KRNL+ +SC++E MY ISF +NEAFI G+ I E+NLY L+P LN EMFRTA TQ+KRQ+
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FSS--NAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
SS N YLWHLRL HINL+RIGRLVK+GLL++LED+SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKA GG+EY ISFID YS YG+
Subjt: FSS--NAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
Query: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
+YLI HKS++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| TrEMBL top hits | e value | %identity | Alignment |
| A0A5A7T2V9 Gag/pol protein | 2.1e-87 | 65.35 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
++S V D KL+FGN+++ L N+ VP++KRNL+ +SC++E MY I+F +NEAFI+ G+ I + ENNLY LRP A LN EMFRTA TQ+KRQ+
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
S +N YLWHLRL HINL+RIGRLVK GLL++L+D SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKARG +EY ISFID YSRYG+
Subjt: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
Query: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
+YL+ HKS++ EKFKEYKTEVEN L K IKI RSDRG EY+DL FQD +IEHGI
Subjt: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| A0A5A7TZD0 Gag/pol protein | 1.3e-89 | 66.54 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
++S V D KL+FGN+++ L N+ VP++KRNL+ +SC++E MY I+F +NEAFI+ G+ I + ENNLY LRP A LN EMFRTA TQ+KRQ+
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
S +N YLWHLRL HINL+RIGRLVK+GLL++L+D SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKARGG+EY ISFID YSRYG+
Subjt: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
Query: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
+YL+ HKS++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| A0A5A7VJG3 Gag/pol protein | 2.4e-86 | 64.96 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
++S V D+KL+FG +++ L N+ VP++KRNL+F+SC++E MY I+F +NEAFI G ++ E+NLY LRP A LN EMFRTA TQ+KRQ+
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
S +N YLWHLRL HINL+RIGRLVK+GLL++L+D+SLPP ES LEGKMTKR FTGK +RAK PLE +HSD CGPMNVKARGG+EY ISFID YSRYG+
Subjt: FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
Query: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
+YL+ HK ++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| A0A5D3BNE1 Gag/pol protein | 1.2e-87 | 66.14 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
++S V D KL+FGN+++ L N+ VP++KRNL+ +SC++E MY ISF +NEAFI G+ I E+NLY L+P LN EMFRTA TQ+KRQ+
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FSS--NAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
SS N YLWHLRL HINL+RIGRLVK+GLL++LED+SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKA GG+EY ISFID YS YG+
Subjt: FSS--NAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
Query: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
+YLI HKS++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt: VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| E2GK51 Gag/pol protein (Fragment) | 8.6e-105 | 77.78 | Show/hide |
Query: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
+VS E V DL L+F +RY+IL++VLYVP MKRNLI I+CILE +Y ISFE+NE FI KGIQI +I ENNLYKLRPTRAN LNTEMFRT ETQ+K+QK
Subjt: MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
Query: FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
SSNAYLWHLRL HINLNRI RLVKSG+L++LEDNSLPP ES LEGKMTKRSFTGKG RAK+PLE VHSD CGPMNVKARGGYEY ISFID +SRYGHVY
Subjt: FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
Query: LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
L+HHKS+SFEKFKEYK EVENE+GKTIK LRSDRG EY+D +FQD LIE GI
Subjt: LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| SwissProt top hits | e value | %identity | Alignment |
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.7e-20 | 30.64 | Show/hide |
Query: IILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKG-IQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNAYLWHLRLCHINL
++L++V +VP ++ NLI + Y S+ N+ + KG + I + LY+ N E+ + E + + + S + LWH R+ H++
Subjt: IILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKG-IQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNAYLWHLRLCHINL
Query: NRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDSFEKFKEYKT
+ L K L+S + ++ P + L GK + SF R L+ V+SD CGPM +++ GG +Y ++FID SR VY++ K F+ F+++
Subjt: NRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDSFEKFKEYKT
Query: EVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
VE E G+ +K LRSD G EY F++ HGI
Subjt: EVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| P25384 Transposon Ty2-C Gag-Pol polyprotein | 2.3e-06 | 25.62 | Show/hide |
Query: LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
L H L H N I + +K ++ L+++ + S + L GK TK KG R K P + +H+D GP++ + Y ISF D +
Subjt: LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
Query: RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
R+ VY +H + + F ++N+ + +++ DRG EY + GI
Subjt: RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| Q12472 Transposon Ty2-DR1 Gag-Pol polyprotein | 2.3e-06 | 25.62 | Show/hide |
Query: LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
L H L H N I + +K ++ L+++ + S + L GK TK KG R K P + +H+D GP++ + Y ISF D +
Subjt: LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
Query: RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
R+ VY +H + + F ++N+ + +++ DRG EY + GI
Subjt: RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 2.3e-06 | 25.62 | Show/hide |
Query: LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
L H L H N I + +K ++ L+++ + S + L GK TK KG R K P + +H+D GP++ + Y ISF D +
Subjt: LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
Query: RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
R+ VY +H + + F ++N+ + +++ DRG EY + GI
Subjt: RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.7e-07 | 23.77 | Show/hide |
Query: NRYIILRNVLYVPQMKRNLIFI------SCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNAYLWH
+R + L N+LYVP + +NLI + + + + + SF++ + G+ + ++ LY+ +++ + S + SS WH
Subjt: NRYIILRNVLYVPQMKRNLIFI------SCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNAYLWH
Query: LRLCHINLNRIGRLVKSGLLSELE-DNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDS
RL H + + ++ + LS L + L K K F+ + PLE ++SD + + Y Y + F+D+++RY +Y + KS
Subjt: LRLCHINLNRIGRLVKSGLLSELE-DNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDS
Query: FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
E F +K +EN I SD G E++ L + +HGI
Subjt: FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
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