; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0046021 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0046021
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr02:10518929..10519687
RNA-Seq ExpressionCmc02g0046021
SyntenyCmc02g0046021
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]1.8e-10477.78Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        +VS E V DL L+F +RY+IL++VLYVP MKRNLI I+CILE +Y ISFE+NE FI  KGIQI  +I ENNLYKLRPTRAN  LNTEMFRT ETQ+K+QK
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
         SSNAYLWHLRL HINLNRI RLVKSG+L++LEDNSLPP ES LEGKMTKRSFTGKG RAK+PLE VHSD CGPMNVKARGGYEY ISFID +SRYGHVY
Subjt:  FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY

Query:  LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        L+HHKS+SFEKFKEYK EVENE+GKTIK LRSDRG EY+D +FQD LIE GI
Subjt:  LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-8966.54Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        ++S   V D KL+FGN+++ L N+  VP++KRNL+ +SC++E MY I+F +NEAFI+  G+ I  +  ENNLY LRP  A   LN EMFRTA TQ+KRQ+
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
         S  +N YLWHLRL HINL+RIGRLVK+GLL++L+D SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKARGG+EY ISFID YSRYG+
Subjt:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH

Query:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        +YL+ HKS++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-8765.35Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        ++S   V D KL+FGN+++ L N+  VP++KRNL+ +SC++E MY I+F +NEAFI+  G+ I  +  ENNLY LRP  A   LN EMFRTA TQ+KRQ+
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
         S  +N YLWHLRL HINL+RIGRLVK GLL++L+D SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKARG +EY ISFID YSRYG+
Subjt:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH

Query:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        +YL+ HKS++ EKFKEYKTEVEN L K IKI RSDRG EY+DL FQD +IEHGI
Subjt:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

KAA0050872.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-8670Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        MVS + V DLKL+F +RYII +NVLY PQMKRNLI ISC+LEQMYRISFEINEAFI                                FR A+TQ+KRQK
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
         S NA+LWHLRL HINLN IGRLVKSGLLS+LEDNSLPP +S LEGKMT+RSFT KG RAK PLE VHSD CGPMNVKARGGY+Y ISFID YSRYGHVY
Subjt:  FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY

Query:  LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEH
        LI +K DSFEKFKEYK EVENE GKTIK  RSDRG EY+DLRFQD LIEH
Subjt:  LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEH

KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-8766.14Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        ++S   V D KL+FGN+++ L N+  VP++KRNL+ +SC++E MY ISF +NEAFI   G+ I     E+NLY L+P      LN EMFRTA TQ+KRQ+
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FSS--NAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
         SS  N YLWHLRL HINL+RIGRLVK+GLL++LED+SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKA GG+EY ISFID YS YG+
Subjt:  FSS--NAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH

Query:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        +YLI HKS++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein2.1e-8765.35Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        ++S   V D KL+FGN+++ L N+  VP++KRNL+ +SC++E MY I+F +NEAFI+  G+ I  +  ENNLY LRP  A   LN EMFRTA TQ+KRQ+
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
         S  +N YLWHLRL HINL+RIGRLVK GLL++L+D SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKARG +EY ISFID YSRYG+
Subjt:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH

Query:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        +YL+ HKS++ EKFKEYKTEVEN L K IKI RSDRG EY+DL FQD +IEHGI
Subjt:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

A0A5A7TZD0 Gag/pol protein1.3e-8966.54Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        ++S   V D KL+FGN+++ L N+  VP++KRNL+ +SC++E MY I+F +NEAFI+  G+ I  +  ENNLY LRP  A   LN EMFRTA TQ+KRQ+
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
         S  +N YLWHLRL HINL+RIGRLVK+GLL++L+D SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKARGG+EY ISFID YSRYG+
Subjt:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH

Query:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        +YL+ HKS++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

A0A5A7VJG3 Gag/pol protein2.4e-8664.96Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        ++S   V D+KL+FG +++ L N+  VP++KRNL+F+SC++E MY I+F +NEAFI   G ++     E+NLY LRP  A   LN EMFRTA TQ+KRQ+
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
         S  +N YLWHLRL HINL+RIGRLVK+GLL++L+D+SLPP ES LEGKMTKR FTGK +RAK PLE +HSD CGPMNVKARGG+EY ISFID YSRYG+
Subjt:  FS--SNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH

Query:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        +YL+ HK ++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

A0A5D3BNE1 Gag/pol protein1.2e-8766.14Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        ++S   V D KL+FGN+++ L N+  VP++KRNL+ +SC++E MY ISF +NEAFI   G+ I     E+NLY L+P      LN EMFRTA TQ+KRQ+
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FSS--NAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH
         SS  N YLWHLRL HINL+RIGRLVK+GLL++LED+SLPP ES LEGKMTKR FTGKG+RAK PLE +HSD CGPMNVKA GG+EY ISFID YS YG+
Subjt:  FSS--NAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGH

Query:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        +YLI HKS++ EKFKEYKTEVEN L K IKILRSDRG EY+DLRFQD +IEHGI
Subjt:  VYLIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

E2GK51 Gag/pol protein (Fragment)8.6e-10577.78Show/hide
Query:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK
        +VS E V DL L+F +RY+IL++VLYVP MKRNLI I+CILE +Y ISFE+NE FI  KGIQI  +I ENNLYKLRPTRAN  LNTEMFRT ETQ+K+QK
Subjt:  MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQK

Query:  FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY
         SSNAYLWHLRL HINLNRI RLVKSG+L++LEDNSLPP ES LEGKMTKRSFTGKG RAK+PLE VHSD CGPMNVKARGGYEY ISFID +SRYGHVY
Subjt:  FSSNAYLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVY

Query:  LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        L+HHKS+SFEKFKEYK EVENE+GKTIK LRSDRG EY+D +FQD LIE GI
Subjt:  LIHHKSDSFEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-2030.64Show/hide
Query:  IILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKG-IQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNAYLWHLRLCHINL
        ++L++V +VP ++ NLI    +    Y  S+  N+ +   KG + I   +    LY+          N E+ +  E  + + + S +  LWH R+ H++ 
Subjt:  IILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKG-IQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNAYLWHLRLCHINL

Query:  NRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDSFEKFKEYKT
          +  L K  L+S  +  ++ P +  L GK  + SF     R    L+ V+SD CGPM +++ GG +Y ++FID  SR   VY++  K   F+ F+++  
Subjt:  NRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDSFEKFKEYKT

Query:  EVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
         VE E G+ +K LRSD G EY    F++    HGI
Subjt:  EVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

P25384 Transposon Ty2-C Gag-Pol polyprotein2.3e-0625.62Show/hide
Query:  LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
        L H  L H N   I + +K   ++ L+++ +  S +        L GK TK     KG R K      P + +H+D  GP++   +    Y ISF D  +
Subjt:  LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS

Query:  RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        R+  VY +H + +      F      ++N+    + +++ DRG EY +          GI
Subjt:  RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

Q12472 Transposon Ty2-DR1 Gag-Pol polyprotein2.3e-0625.62Show/hide
Query:  LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
        L H  L H N   I + +K   ++ L+++ +  S +        L GK TK     KG R K      P + +H+D  GP++   +    Y ISF D  +
Subjt:  LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS

Query:  RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        R+  VY +H + +      F      ++N+    + +++ DRG EY +          GI
Subjt:  RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

Q12491 Transposon Ty2-B Gag-Pol polyprotein2.3e-0625.62Show/hide
Query:  LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS
        L H  L H N   I + +K   ++ L+++ +  S +        L GK TK     KG R K      P + +H+D  GP++   +    Y ISF D  +
Subjt:  LWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESR-------LEGKMTKRSFTGKGFRAKI-----PLEPVHSDFCGPMNVKARGGYEYLISFIDYYS

Query:  RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
        R+  VY +H + +      F      ++N+    + +++ DRG EY +          GI
Subjt:  RYGHVYLIHHKSDS--FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.7e-0723.77Show/hide
Query:  NRYIILRNVLYVPQMKRNLIFI------SCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNAYLWH
        +R + L N+LYVP + +NLI +      + +  + +  SF++ +      G+ +     ++ LY+          +++      + S +   SS    WH
Subjt:  NRYIILRNVLYVPQMKRNLIFI------SCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNAYLWH

Query:  LRLCHINLNRIGRLVKSGLLSELE-DNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDS
         RL H   + +  ++ +  LS L   +        L  K  K  F+     +  PLE ++SD      + +   Y Y + F+D+++RY  +Y +  KS  
Subjt:  LRLCHINLNRIGRLVKSGLLSELE-DNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDS

Query:  FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI
         E F  +K  +EN     I    SD G E++ L   +   +HGI
Subjt:  FEKFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCAGTTGAAGTAGTGAGAGATTTAAAGTTGTATTTTGGAAATAGATATATCATACTTAGGAATGTCTTGTATGTACCACAAATGAAAAGAAATTTAATA
TTTATTTCTTGTATTCTGGAACAAATGTATAGAATATCTTTCGAAATTAATGAAGCGTTCATTTTCTATAAAGGTATCCAAATCTATTTTTCTATACATGAAAAC
AACTTATATAAGTTAAGACCAACACGAGCAAATTTTTTCTTAAATACTGAAATGTTTAGAACAGCTGAAACTCAAAGTAAAAGACAAAAATTTTCTTCTAATGCC
TATTTATGGCACTTGAGACTTTGTCACATAAATCTCAATAGGATAGGAAGATTAGTTAAAAGTGGACTTCTAAGTGAGTTAGAAGATAACTCTTTACCTCCTTCT
GAATCTCGTCTTGAAGGAAAAATGACCAAGAGATCTTTTACTGGAAAAGGTTTTAGAGCCAAAATACCTTTAGAGCCCGTACATTCGGACTTTTGTGGACCAATG
AACGTCAAAGCTCGGGGAGGGTACGAATATCTCATTAGTTTTATTGATTATTATTCGAGGTATGGTCATGTTTACCTAATTCATCACAAGTCTGATTCTTTTGAA
AAATTCAAAGAATATAAGACTGAAGTTGAGAATGAATTAGGTAAAACAATAAAAATACTTCGATCAGATCGAGGTGAAGAATATTTGGACTTACGATTCCAAGAC
TGTTTGATAGAACATGGAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCAGTTGAAGTAGTGAGAGATTTAAAGTTGTATTTTGGAAATAGATATATCATACTTAGGAATGTCTTGTATGTACCACAAATGAAAAGAAATTTAATA
TTTATTTCTTGTATTCTGGAACAAATGTATAGAATATCTTTCGAAATTAATGAAGCGTTCATTTTCTATAAAGGTATCCAAATCTATTTTTCTATACATGAAAAC
AACTTATATAAGTTAAGACCAACACGAGCAAATTTTTTCTTAAATACTGAAATGTTTAGAACAGCTGAAACTCAAAGTAAAAGACAAAAATTTTCTTCTAATGCC
TATTTATGGCACTTGAGACTTTGTCACATAAATCTCAATAGGATAGGAAGATTAGTTAAAAGTGGACTTCTAAGTGAGTTAGAAGATAACTCTTTACCTCCTTCT
GAATCTCGTCTTGAAGGAAAAATGACCAAGAGATCTTTTACTGGAAAAGGTTTTAGAGCCAAAATACCTTTAGAGCCCGTACATTCGGACTTTTGTGGACCAATG
AACGTCAAAGCTCGGGGAGGGTACGAATATCTCATTAGTTTTATTGATTATTATTCGAGGTATGGTCATGTTTACCTAATTCATCACAAGTCTGATTCTTTTGAA
AAATTCAAAGAATATAAGACTGAAGTTGAGAATGAATTAGGTAAAACAATAAAAATACTTCGATCAGATCGAGGTGAAGAATATTTGGACTTACGATTCCAAGAC
TGTTTGATAGAACATGGAATCTAG
Protein sequenceShow/hide protein sequence
MVSVEVVRDLKLYFGNRYIILRNVLYVPQMKRNLIFISCILEQMYRISFEINEAFIFYKGIQIYFSIHENNLYKLRPTRANFFLNTEMFRTAETQSKRQKFSSNA
YLWHLRLCHINLNRIGRLVKSGLLSELEDNSLPPSESRLEGKMTKRSFTGKGFRAKIPLEPVHSDFCGPMNVKARGGYEYLISFIDYYSRYGHVYLIHHKSDSFE
KFKEYKTEVENELGKTIKILRSDRGEEYLDLRFQDCLIEHGI