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Cmc02g0046401 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0046401
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr02:11397333..11397743
RNA-Seq ExpressionCmc02g0046401
SyntenyCmc02g0046401
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038341.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-5379.26Show/hide
Query:  ERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVH
        +R NTW +VSL KDHH VG KWVYKVKC  DGT+DRYKARLVAKGYNQQEGIDFSD FSPVAKI TVK FLAL  +YNWS SQM+INNAFLN DLFEEVH
Subjt:  ERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVH

Query:  MSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
        ++LPL  QTSQVP KGEKLAC+LNKS+Y LKQAS+
Subjt:  MSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

KAA0038364.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.3e-7299.26Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQM+INNAFLNRDLFEEV
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
        HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
Subjt:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

KAA0043630.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]2.2e-5379.41Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        MERTNTW +VSL K++H VG KWVYKVK    GTVDRYKARL+AKGYNQQEGIDFSD FS VAKIVTVK FLAL  SYNWSF+QM+INNAFLN DLFEEV
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
         MSLPLGYQTSQVP  GEKLA +LNKS+YG KQAS+
Subjt:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

XP_016901937.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]1.3e-4878.86Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        MERTNTW +VS  KDHH VG KWVYKVKC LDGT+DRYKARLVAKGYNQQEGIDF D FS VAKIVTVK FLALATSYNWSF+QM+INN FLN +LFEEV
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACE
        HMSLPLGYQTSQ   K  K+  +
Subjt:  HMSLPLGYQTSQVPGKGEKLACE

XP_038879273.1 uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]1.5e-5781.62Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        MERTNTW +VSL K+HH +G KWVYKVK   DGTVD+YKARLVAK YNQQE IDFSD FSP+AKIVTVK F ALATSYNWS +QM+INNAFLN DLFEEV
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
        HMSLPLGYQTSQVP KGEKLAC+LNKS+YGLKQAS+
Subjt:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

TrEMBL top hitse value%identityAlignment
A0A1S4E133 uncharacterized mitochondrial protein AtMg00820-like6.2e-4978.86Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        MERTNTW +VS  KDHH VG KWVYKVKC LDGT+DRYKARLVAKGYNQQEGIDF D FS VAKIVTVK FLALATSYNWSF+QM+INN FLN +LFEEV
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACE
        HMSLPLGYQTSQ   K  K+  +
Subjt:  HMSLPLGYQTSQVPGKGEKLACE

A0A5A7SYT6 Rhodanese-like domain-containing protein 6 isoform X25.8e-4777.78Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVD-RYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEE
        MERTNTW +VSLLK+HH VG KWVYKVK   DGTVD RYKARLVAKGY QQEGIDF D FSPVAKIVTVK FLAL  SYNWS +QM+INNAFLN DLFEE
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVD-RYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEE

Query:  VHMSLPLGYQTSQVPGKGEKLACELN
        VHMSLPLGY+TSQVP K       LN
Subjt:  VHMSLPLGYQTSQVPGKGEKLACELN

A0A5A7T4H5 Putative mitochondrial protein3.0e-7299.26Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQM+INNAFLNRDLFEEV
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
        HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
Subjt:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

A0A5A7TK43 Reverse transcriptase, RNA-dependent DNA polymerase1.1e-5379.41Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        MERTNTW +VSL K++H VG KWVYKVK    GTVDRYKARL+AKGYNQQEGIDFSD FS VAKIVTVK FLAL  SYNWSF+QM+INNAFLN DLFEEV
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
         MSLPLGYQTSQVP  GEKLA +LNKS+YG KQAS+
Subjt:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

A0A5D3BDH6 Retrovirus-related Pol polyprotein from transposon TNT 1-946.4e-5479.26Show/hide
Query:  ERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVH
        +R NTW +VSL KDHH VG KWVYKVKC  DGT+DRYKARLVAKGYNQQEGIDFSD FSPVAKI TVK FLAL  +YNWS SQM+INNAFLN DLFEEVH
Subjt:  ERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVH

Query:  MSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
        ++LPL  QTSQVP KGEKLAC+LNKS+Y LKQAS+
Subjt:  MSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.6e-2341.67Show/hide
Query:  NTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVHMSL
        NTW +    ++ +IV  +WV+ VK N  G   RYKARLVA+G+ Q+  ID+ + F+PVA+I + +  L+L   YN    QM++  AFLN  L EE++M L
Subjt:  NTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVHMSL

Query:  PLGYQTSQVPGKGEKLACELNKSMYGLKQASK
        P G   +          C+LNK++YGLKQA++
Subjt:  PLGYQTSQVPGKGEKLACELNKSMYGLKQASK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-2744.85Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        +++  T+ +V L K    + CKWV+K+K + D  + RYKARLV KG+ Q++GIDF +IFSPV K+ +++T L+LA S +    Q+++  AFL+ DL EE+
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
        +M  P G+   +V GK + + C+LNKS+YGLKQA +
Subjt:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

P92520 Uncharacterized mitochondrial protein AtMg008202.1e-1747.73Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALA------TSYNWSF
        + R  TWI+V    + +I+GCKWV+K K + DGT+DR KARLVAKG++Q+EGI F + +SPV +  T++T L +A       S NW F
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALA------TSYNWSF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.4e-2743.61Show/hide
Query:  NTWIVVSLLKDH-HIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVHMS
        +TW +V     H  IVGC+W++  K N DG+++RYKARLVAKGYNQ+ G+D+++ FSPV K  +++  L +A   +W   Q+++NNAFL   L ++V+MS
Subjt:  NTWIVVSLLKDH-HIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVHMS

Query:  LPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
         P G+     P       C+L K++YGLKQA +
Subjt:  LPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.4e-2646.22Show/hide
Query:  IVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVHMSLPLGYQTSQVPGKG
        IVGC+W++  K N DG+++RYKARLVAKGYNQ+ G+D+++ FSPV K  +++  L +A   +W   Q+++NNAFL   L +EV+MS P G+     P   
Subjt:  IVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVHMSLPLGYQTSQVPGKG

Query:  EKLACELNKSMYGLKQASK
            C L K++YGLKQA +
Subjt:  EKLACELNKSMYGLKQASK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.0e-3955.15Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV
        ME T+TW + +L  +   +GCKWVYK+K N DGT++RYKARLVAKGY QQEGIDF + FSPV K+ +VK  LA++  YN++  Q++I+NAFLN DL EE+
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEV

Query:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK
        +M LP GY   Q         C L KS+YGLKQAS+
Subjt:  HMSLPLGYQTSQVPGKGEKLACELNKSMYGLKQASK

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.5e-1847.73Show/hide
Query:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALA------TSYNWSF
        + R  TWI+V    + +I+GCKWV+K K + DGT+DR KARLVAKG++Q+EGI F + +SPV +  T++T L +A       S NW F
Subjt:  MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALA------TSYNWSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGAACCAACACATGGATCGTTGTATCCCTCTTAAAAGATCATCACATCGTTGGCTGTAAATGGGTGTACAAAGTGAAATGTAACCTAGATGGCACAGTC
GACAGATACAAGGCAAGGCTTGTAGCAAAAGGCTACAACCAACAAGAGGGGATAGACTTTTCAGATATTTTCTCACCAGTAGCGAAAATTGTCACTGTCAAGACT
TTTCTAGCCCTTGCTACATCCTATAATTGGTCCTTTAGTCAAATGAACATAAACAATGCCTTCTTAAATAGAGATTTGTTTGAAGAAGTGCATATGTCCTTACCA
TTGGGCTATCAAACCTCACAAGTGCCAGGAAAAGGAGAAAAGCTAGCTTGCGAACTCAATAAATCCATGTACGGTCTTAAGCAAGCCTCAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGAACCAACACATGGATCGTTGTATCCCTCTTAAAAGATCATCACATCGTTGGCTGTAAATGGGTGTACAAAGTGAAATGTAACCTAGATGGCACAGTC
GACAGATACAAGGCAAGGCTTGTAGCAAAAGGCTACAACCAACAAGAGGGGATAGACTTTTCAGATATTTTCTCACCAGTAGCGAAAATTGTCACTGTCAAGACT
TTTCTAGCCCTTGCTACATCCTATAATTGGTCCTTTAGTCAAATGAACATAAACAATGCCTTCTTAAATAGAGATTTGTTTGAAGAAGTGCATATGTCCTTACCA
TTGGGCTATCAAACCTCACAAGTGCCAGGAAAAGGAGAAAAGCTAGCTTGCGAACTCAATAAATCCATGTACGGTCTTAAGCAAGCCTCAAAATAG
Protein sequenceShow/hide protein sequence
MERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGIDFSDIFSPVAKIVTVKTFLALATSYNWSFSQMNINNAFLNRDLFEEVHMSLP
LGYQTSQVPGKGEKLACELNKSMYGLKQASK