; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0046641 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0046641
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr02:11961646..11962458
RNA-Seq ExpressionCmc02g0046641
SyntenyCmc02g0046641
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036533.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]3.6e-11183.67Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        MSKGFKVNES+KCIYYKTKGRLCIIICLYVDDMLIFGSNL++INDVKSMLSANFD+KDLGEADVIL IKITRTENGIFLDQSHYIEKILKKYNYFDSK A
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD
        +TPYDSSVKLFKNT D+VNQSEYASII S+ YAA+CT+ DIAY +GLL RFTSR SLEHWNAI RVMRYL+KTQ+LGLHYNKFPVV EGY++ADWNSLSD
Subjt:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD

Query:  VSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE
         SKATSGYIFNI GG  AWK KK TI+ +S M+ EMI LA AN E
Subjt:  VSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE

KAA0038407.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.0e-121100Show/hide
Query:  MLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLL
        MLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLL
Subjt:  MLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLL

Query:  CRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSC
        CRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSC
Subjt:  CRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSC

Query:  FPKLTIRDSYMEKTDTSHTNPL
        FPKLTIRDSYMEKTDTSHTNPL
Subjt:  FPKLTIRDSYMEKTDTSHTNPL

KAA0058878.1 putative polyprotein [Cucumis melo var. makuwa]1.6e-11483.73Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        MSKGFKVNESDKC+YYKTKGRLCIIICLYVDDML F SNL+VINDVKSMLS NFD+KDLGEAD+ILGIKITRT+NGI LDQS+YIEKILKKYNYFDSKPA
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD
         TPYDSSVKLFKNT DNVNQSEY SII SL Y A+CTRPDIAY +GLLCRFTSR  LEHWNAIER+MRYLKKTQNLGLHYNKF  VLEGY++ DWNSLSD
Subjt:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD

Query:  VSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSCFPKL
         SKATSGYIFNI GGV AWKSKKQTI+AQS ME EMIALA A+ E S    L
Subjt:  VSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSCFPKL

KAA0060459.1 hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa]1.5e-10488.53Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        MSKGFKVNESDKCIYYKT+GRLCIIICLYVDDMLIFGSNL+VINDVKSMLS NFD+KDLGEADVILGIKITRTENGIFLDQSHYIEK LKKYNYFDSKP 
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD
         TPYDSSVKLFKNT D+VNQ+EYASII SL YA + TRP IAY +GLLCRFTSR SLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYS+ADWNSL D
Subjt:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD

Query:  VSKATSGYIFNIEGGVGA
         SKATSGYIFNI GG  A
Subjt:  VSKATSGYIFNIEGGVGA

TYK06419.1 hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]2.0e-10686.55Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        +SKGFKVNESDKCIYYKT+GRLCIIICLYVDD+LIFGSNLYVINDVKSMLS NFD+K+L EADVILGIKITRT+NGI LDQSHYIEKILKKYNYFDSKP 
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD
         TPYDSSVKLF+NT D+VNQSEYASII SL YAA+CTRPDIAY +GLLCRFTSR SLEHWN IER++RYLKKTQNLGLHYNKFP VLEGY +ADWNSLSD
Subjt:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD

Query:  VSKATSGYIFNIEGGVGAWKSKK
         SKATSGYIFNI GG  AWKSKK
Subjt:  VSKATSGYIFNIEGGVGAWKSKK

TrEMBL top hitse value%identityAlignment
A0A5A7T0X0 Retrotransposon protein, putative, Ty1-copia subclass1.7e-11183.67Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        MSKGFKVNES+KCIYYKTKGRLCIIICLYVDDMLIFGSNL++INDVKSMLSANFD+KDLGEADVIL IKITRTENGIFLDQSHYIEKILKKYNYFDSK A
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD
        +TPYDSSVKLFKNT D+VNQSEYASII S+ YAA+CT+ DIAY +GLL RFTSR SLEHWNAI RVMRYL+KTQ+LGLHYNKFPVV EGY++ADWNSLSD
Subjt:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD

Query:  VSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE
         SKATSGYIFNI GG  AWK KK TI+ +S M+ EMI LA AN E
Subjt:  VSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE

A0A5A7TA08 Retrovirus-related Pol polyprotein from transposon TNT 1-944.9e-122100Show/hide
Query:  MLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLL
        MLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLL
Subjt:  MLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLL

Query:  CRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSC
        CRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSC
Subjt:  CRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSC

Query:  FPKLTIRDSYMEKTDTSHTNPL
        FPKLTIRDSYMEKTDTSHTNPL
Subjt:  FPKLTIRDSYMEKTDTSHTNPL

A0A5D3C7T6 Reverse transcriptase Ty1/copia-type domain-containing protein9.8e-10786.55Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        +SKGFKVNESDKCIYYKT+GRLCIIICLYVDD+LIFGSNLYVINDVKSMLS NFD+K+L EADVILGIKITRT+NGI LDQSHYIEKILKKYNYFDSKP 
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD
         TPYDSSVKLF+NT D+VNQSEYASII SL YAA+CTRPDIAY +GLLCRFTSR SLEHWN IER++RYLKKTQNLGLHYNKFP VLEGY +ADWNSLSD
Subjt:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD

Query:  VSKATSGYIFNIEGGVGAWKSKK
         SKATSGYIFNI GG  AWKSKK
Subjt:  VSKATSGYIFNIEGGVGAWKSKK

A0A5D3D4T4 Reverse transcriptase Ty1/copia-type domain-containing protein7.1e-10588.53Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        MSKGFKVNESDKCIYYKT+GRLCIIICLYVDDMLIFGSNL+VINDVKSMLS NFD+KDLGEADVILGIKITRTENGIFLDQSHYIEK LKKYNYFDSKP 
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD
         TPYDSSVKLFKNT D+VNQ+EYASII SL YA + TRP IAY +GLLCRFTSR SLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYS+ADWNSL D
Subjt:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD

Query:  VSKATSGYIFNIEGGVGA
         SKATSGYIFNI GG  A
Subjt:  VSKATSGYIFNIEGGVGA

A0A5D3DJH9 Putative polyprotein7.5e-11583.73Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        MSKGFKVNESDKC+YYKTKGRLCIIICLYVDDML F SNL+VINDVKSMLS NFD+KDLGEAD+ILGIKITRT+NGI LDQS+YIEKILKKYNYFDSKPA
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD
         TPYDSSVKLFKNT DNVNQSEY SII SL Y A+CTRPDIAY +GLLCRFTSR  LEHWNAIER+MRYLKKTQNLGLHYNKF  VLEGY++ DWNSLSD
Subjt:  YTPYDSSVKLFKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSD

Query:  VSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSCFPKL
         SKATSGYIFNI GGV AWKSKKQTI+AQS ME EMIALA A+ E S    L
Subjt:  VSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDEPSCFPKL

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.2e-3135.66Show/hide
Query:  VNES-DKCIYYKTKGRL--CIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTP
        VN S D+CIY   KG +   I + LYVDD++I   ++  +N+ K  L   F + DL E    +GI+I   E+ I+L QS Y++KIL K+N  +     TP
Subjt:  VNES-DKCIYYKTKGRL--CIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTP

Query:  YDSSVKL-FKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNK---FPVVLEGYSNADWNSLS
          S +     N+D++ N +   S+I  L Y   CTRPD+   + +L R++S+ + E W  ++RV+RYLK T ++ L + K   F   + GY ++DW    
Subjt:  YDSSVKL-FKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNK---FPVVLEGYSNADWNSLS

Query:  DVSKATSGYIFNI-EGGVGAWKSKKQTIVAQSTMELEMIALAAA
           K+T+GY+F + +  +  W +K+Q  VA S+ E E +AL  A
Subjt:  DVSKATSGYIFNI-EGGVGAWKSKKQTIVAQSTMELEMIALAAA

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-4140.24Show/hide
Query:  SDKCIYYKT-KGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKIT--RTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDS
        SD C+Y+K       II+ LYVDDMLI G +  +I  +K  LS +FD+KDLG A  ILG+KI   RT   ++L Q  YIE++L+++N  ++KP  TP   
Subjt:  SDKCIYYKT-KGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKIT--RTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDS

Query:  SVKLFK-------NTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLS
         +KL K           N+ +  Y+S + SL YA  CTRPDIA+ +G++ RF      EHW A++ ++RYL+ T    L +     +L+GY++AD     
Subjt:  SVKLFK-------NTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLS

Query:  DVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE
        D  K+++GY+F   GG  +W+SK Q  VA ST E E IA      E
Subjt:  DVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE

P92519 Uncharacterized mitochondrial protein AtMg008104.4e-2732.41Show/hide
Query:  ICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYAS
        + LYVDD+L+ GS+  ++N +   LS+ F +KDLG     LGI+I    +G+FL Q+ Y E+IL      D KP  TP    +    +T    + S++ S
Subjt:  ICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYAS

Query:  IISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNK-FPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQ
        I+ +L Y    TRPDI+Y + ++C+     +L  ++ ++RV+RY+K T   GL+ +K   + ++ + ++DW   +   ++T+G+   +   + +W +K+Q
Subjt:  IISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNK-FPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQ

Query:  TIVAQSTMELEMIALA
          V++S+ E E  ALA
Subjt:  TIVAQSTMELEMIALA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.2e-3034.43Show/hide
Query:  GFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTP
        GF  + SD  ++   +G+  + + +YVDD+LI G++  ++++    LS  F +KD  E    LGI+  R   G+ L Q  YI  +L + N   +KP  TP
Subjt:  GFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTP

Query:  YDSSVKLFKNTDDNV-NQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVV-LEGYSNADWNSLSDV
           S KL   +   + + +EY  I+ SL Y A  TRPDI+Y +  L +F    + EH  A++R++RYL  T N G+   K   + L  YS+ADW    D 
Subjt:  YDSSVKLFKNTDDNV-NQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVV-LEGYSNADWNSLSDV

Query:  SKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE
          +T+GYI  +     +W SKKQ  V +S+ E E  ++A  + E
Subjt:  SKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.9e-3033.2Show/hide
Query:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA
        ++ GF  + SD  ++   +GR  I + +YVDD+LI G++  ++      LS  F +K+  +    LGI+  R   G+ L Q  Y   +L + N   +KP 
Subjt:  MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPA

Query:  YTPYDSSVKLFKNTDDNV-NQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVV-LEGYSNADWNSL
         TP  +S KL  ++   + + +EY  I+ SL Y A  TRPD++Y +  L ++    + +HWNA++RV+RYL  T + G+   K   + L  YS+ADW   
Subjt:  YTPYDSSVKLFKNTDDNV-NQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVV-LEGYSNADWNSL

Query:  SDVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE
        +D   +T+GYI  +     +W SKKQ  V +S+ E E  ++A  + E
Subjt:  SDVSKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.6e-3031.97Show/hide
Query:  GFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTP
        GF  + SD   + K    L + + +YVDD++I  +N   ++++KS L + F ++DLG     LG++I R+  GI + Q  Y   +L +      KP+  P
Subjt:  GFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTP

Query:  YDSSVKLFKNT-DDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHY-NKFPVVLEGYSNADWNSLSDV
         D SV    ++  D V+   Y  +I  L Y    TR DI++ +  L +F+    L H  A+ +++ Y+K T   GL Y ++  + L+ +S+A + S  D 
Subjt:  YDSSVKLFKNT-DDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHY-NKFPVVLEGYSNADWNSLSDV

Query:  SKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE
         ++T+GY   +   + +WKSKKQ +V++S+ E E  AL+ A DE
Subjt:  SKATSGYIFNIEGGVGAWKSKKQTIVAQSTMELEMIALAAANDE

ATMG00810.1 DNA/RNA polymerases superfamily protein3.1e-2832.41Show/hide
Query:  ICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYAS
        + LYVDD+L+ GS+  ++N +   LS+ F +KDLG     LGI+I    +G+FL Q+ Y E+IL      D KP  TP    +    +T    + S++ S
Subjt:  ICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKLFKNTDDNVNQSEYAS

Query:  IISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNK-FPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQ
        I+ +L Y    TRPDI+Y + ++C+     +L  ++ ++RV+RY+K T   GL+ +K   + ++ + ++DW   +   ++T+G+   +   + +W +K+Q
Subjt:  IISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNK-FPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWKSKKQ

Query:  TIVAQSTMELEMIALA
          V++S+ E E  ALA
Subjt:  TIVAQSTMELEMIALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTAAAGGTAGGCTATGTATTATCATATGCCTATACGTAGATGACATGTTAATTTTTGG
ATCAAATTTGTATGTCATAAATGATGTAAAATCTATGTTGAGTGCAAATTTTGACATAAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTACAAGAACTG
AAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTCGATAGTAAACCAGCTTATACACCTTATGACTCTAGTGTGAAATTA
TTCAAGAACACTGATGACAATGTTAACCAATCCGAGTACGCTAGTATCATAAGTAGTTTGAGTTATGCTGCTAATTGCACTAGACCAGACATAGCTTACGTCATAGGATT
ACTATGTAGGTTTACCAGCAGACTCAGTCTAGAACACTGGAATGCAATAGAGAGAGTAATGAGATACCTTAAGAAAACTCAAAACCTAGGATTACATTATAACAAGTTTC
CCGTTGTACTTGAAGGTTACAGCAATGCTGATTGGAACTCTCTCTCAGATGTCTCAAAGGCTACAAGTGGTTATATTTTTAATATAGAAGGAGGAGTTGGAGCTTGGAAA
TCCAAGAAACAGACAATCGTAGCTCAGTCAACGATGGAGTTAGAGATGATAGCACTAGCTGCTGCTAATGATGAACCAAGCTGCTTTCCAAAGCTTACTATCAGAGATTC
CTACATGGAAAAGACCGATACTAGCCATACTAATCCATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTAAAGGTAGGCTATGTATTATCATATGCCTATACGTAGATGACATGTTAATTTTTGG
ATCAAATTTGTATGTCATAAATGATGTAAAATCTATGTTGAGTGCAAATTTTGACATAAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTACAAGAACTG
AAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTCGATAGTAAACCAGCTTATACACCTTATGACTCTAGTGTGAAATTA
TTCAAGAACACTGATGACAATGTTAACCAATCCGAGTACGCTAGTATCATAAGTAGTTTGAGTTATGCTGCTAATTGCACTAGACCAGACATAGCTTACGTCATAGGATT
ACTATGTAGGTTTACCAGCAGACTCAGTCTAGAACACTGGAATGCAATAGAGAGAGTAATGAGATACCTTAAGAAAACTCAAAACCTAGGATTACATTATAACAAGTTTC
CCGTTGTACTTGAAGGTTACAGCAATGCTGATTGGAACTCTCTCTCAGATGTCTCAAAGGCTACAAGTGGTTATATTTTTAATATAGAAGGAGGAGTTGGAGCTTGGAAA
TCCAAGAAACAGACAATCGTAGCTCAGTCAACGATGGAGTTAGAGATGATAGCACTAGCTGCTGCTAATGATGAACCAAGCTGCTTTCCAAAGCTTACTATCAGAGATTC
CTACATGGAAAAGACCGATACTAGCCATACTAATCCATTGTGA
Protein sequenceShow/hide protein sequence
MSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNLYVINDVKSMLSANFDIKDLGEADVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPAYTPYDSSVKL
FKNTDDNVNQSEYASIISSLSYAANCTRPDIAYVIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSNADWNSLSDVSKATSGYIFNIEGGVGAWK
SKKQTIVAQSTMELEMIALAAANDEPSCFPKLTIRDSYMEKTDTSHTNPL