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Cmc02g0046861 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0046861
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr02:12440950..12447612
RNA-Seq ExpressionCmc02g0046861
SyntenyCmc02g0046861
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035161.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-1895.92Show/hide
Query:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ
        +MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL Q
Subjt:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ
KAA0049607.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-1792.16Show/hide
Query:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQ
        +MASTNSKATKHRWTTIEDEALVECLLQLVEE GWRAD+GTFK GYLVQVQ
Subjt:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQ
TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]3.4e-1788.46Show/hide
Query:  INTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ
        ++T MASTNSKATKHRWTTIEDE LVECLLQLVEE GWRADNGTFKLGYL Q
Subjt:  INTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ
TYK15965.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-1792.16Show/hide
Query:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQ
        +MASTNSKATKHRWTTIEDEALVECLLQLVEE GWRAD+GTFK GYLVQVQ
Subjt:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQ
TYK29231.1 retrotransposon protein [Cucumis melo var. makuwa]6.8e-1894Show/hide
Query:  INTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL
        I   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL
Subjt:  INTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL
TrEMBL top hitse value%identityAlignment
A0A5A7T0P1 Retrotransposon protein1.1e-1895.92Show/hide
Query:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ
        +MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL Q
Subjt:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ
A0A5A7U5I3 Retrotransposon protein9.6e-1892.16Show/hide
Query:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQ
        +MASTNSKATKHRWTTIEDEALVECLLQLVEE GWRAD+GTFK GYLVQVQ
Subjt:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQ
A0A5D3C7T4 Uncharacterized protein1.6e-1788.46Show/hide
Query:  INTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ
        ++T MASTNSKATKHRWTTIEDE LVECLLQLVEE GWRADNGTFKLGYL Q
Subjt:  INTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ
A0A5D3CWW4 Retrotransposon protein9.6e-1892.16Show/hide
Query:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQ
        +MASTNSKATKHRWTTIEDEALVECLLQLVEE GWRAD+GTFK GYLVQVQ
Subjt:  SMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQ
A0A5D3E0K8 Retrotransposon protein3.3e-1894Show/hide
Query:  INTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL
        I   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL
Subjt:  INTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGAACAAGGATATATAGAAGTTCCTTGATGGTATCTACTTCAAGAAAGAGAAGTTGGAGCTTGGAGGTGATCAATACAAGTATGGCATCGACAAATTCA
AAAGCCACTAAGCATCGGTGGACAACCATTGAGGATGAGGCGTTAGTTGAGTGCTTACTACAACTAGTAGAGGAATGTGGCTGGAGGGCTGATAATGGAACATTC
AAACTGGGATATTTGGTACAAGTACAAAACTAA
mRNA sequenceShow/hide mRNA sequence
AAATGGGCGGTTTAATCTTTTTACAAAATAAAATAAAACCCTCTCTCCTCTTAATTTCTTCTCAATCTTTCATCGTCTCTCTCCCATCTCTTCTTCTTCGCGCAT
CAAACCCTAGCCTCCTCCGCTCTTCATCTCCTCTAATTTCTCTTCTATCTCTTTTTCTTTTTCTCGTACAAAGAAGTAAGAAATATCATGTCAAGAACAAGGATA
TATAGAAGTTCCTTGATGGTATCTACTTCAAGAAAGAGAAGTTGGAGCTTGGAGGTGATCAATACAAGTATGGCATCGACAAATTCAAAAGCCACTAAGCATCGG
TGGACAACCATTGAGGATGAGGCGTTAGTTGAGTGCTTACTACAACTAGTAGAGGAATGTGGCTGGAGGGCTGATAATGGAACATTCAAACTGGGATATTTGGTA
CAAGTACAAAACTAATGACAGAAAAAATTCCTGAAAGCAACATACAAGTGACTCTAAATCTAGAATCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGCCATAG
CAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTCGATGATTAGGTTAAGGGACACCCCA
ATGCTCAAGCCCTACTAAATAAACCATTTCCTTACTTCCATGACTTGGAAGTTGTGTTTGGTAGAGATAGGGCTACTGGTGGTAGATGTAAGACACCTATTGAAA
TGCACTCACAAACTGCAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTAAGGGGAGG
ACATGTCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGTCAAGTAAGAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCGTGCAA
GTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAAAAATGGAAATAGATCATCCCTACACAAACGATTATATGCTAAATTACAGAT
TATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTATCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTA
TAGAAAATGCATGTGTATCTTAGAAAGACAACCATAACCATAACTAAAGTAACTTTACTTAACTTTCACTTTTGTTTGAGCCTTTGGTCGCTTACTTTTGAAACA
AACTAGACCCCTTGCTTAACTATAACTTTTGTAAACCCCATCAAATTAAATGACTTGGTATATTTTGTAGATGGATTGTAATATTCCTAATTAG
Protein sequenceShow/hide protein sequence
MSRTRIYRSSLMVSTSRKRSWSLEVINTSMASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQVQN