; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0048401 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0048401
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPHD finger protein ALFIN-LIKE 3-like
Genome locationCMiso1.1chr02:13922125..13922899
RNA-Seq ExpressionCmc02g0048401
SyntenyCmc02g0048401
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011011 - Zinc finger, FYVE/PHD-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032497.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa]3.3e-3369.57Show/hide
Query:  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFWI
        RRLFNIIND+ TVFEVVTNIAKKQVK+KSSTANGSKSKSS         L+R              +R + + YEEDEDEHGDTLCRACGEN AS+EFWI
Subjt:  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFWI

Query:  CCDIYEKWFHGKFVV
        CCDIYEKWFHGKFVV
Subjt:  CCDIYEKWFHGKFVV

KAA0067842.1 PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa]2.7e-3568.29Show/hide
Query:  FSMFFLCRRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGEN
        F+  F  RRRLFNIIND+PTVFEVVTNIAK+QVKEKSSTANGSKSKSSFK        S    ++  C + +Q +R++ + YEED+DEH D LCRACGEN
Subjt:  FSMFFLCRRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGEN

Query:  CASNEFWICCDIYEKWFHGKFVV
         AS+EFWICCDIYEKWFHGKFVV
Subjt:  CASNEFWICCDIYEKWFHGKFVV

TYJ98373.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa]2.3e-3168.7Show/hide
Query:  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFWI
        RRLFNIIND+ TVFE VTNIAKKQVK+KSSTANGSKSKSS         L+R              +R + + YEEDEDEHGDTLCRACGEN AS+EFWI
Subjt:  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFWI

Query:  CCDIYEKWFHGKFVV
        CCDIYEKWFHGKFVV
Subjt:  CCDIYEKWFHGKFVV

XP_004141692.1 PHD finger protein ALFIN-LIKE 3 [Cucumis sativus]1.2e-3269.57Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        RRRLFN+INDLPTVFEVVT IAKKQVKEKSSTANGSKSKSSFK        SR   ++    + +Q        YEEDEDEHGDTLC ACGEN AS+EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCDI EKWFHGK V
Subjt:  ICCDIYEKWFHGKFV

XP_008462331.1 PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo]8.0e-3268.7Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        RRRLFN+INDLPTVFEVVT IAKKQVKEKSS+ANGSKSKSSFK        SR    +    + +Q        YEEDEDEHGDTLC ACGEN AS+EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCDI EKWFHGK V
Subjt:  ICCDIYEKWFHGKFV

TrEMBL top hitse value%identityAlignment
A0A0A0K9L1 PHD-type domain-containing protein6.0e-3369.57Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        RRRLFN+INDLPTVFEVVT IAKKQVKEKSSTANGSKSKSSFK        SR   ++    + +Q        YEEDEDEHGDTLC ACGEN AS+EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCDI EKWFHGK V
Subjt:  ICCDIYEKWFHGKFV

A0A1S3CGR0 PHD finger protein ALFIN-LIKE 3-like isoform X23.9e-3268.7Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        RRRLFN+INDLPTVFEVVT IAKKQVKEKSS+ANGSKSKSSFK        SR    +    + +Q        YEEDEDEHGDTLC ACGEN AS+EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCDI EKWFHGK V
Subjt:  ICCDIYEKWFHGKFV

A0A5A7ST15 PHD finger protein ALFIN-LIKE 3-like isoform X21.6e-3369.57Show/hide
Query:  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFWI
        RRLFNIIND+ TVFEVVTNIAKKQVK+KSSTANGSKSKSS         L+R              +R + + YEEDEDEHGDTLCRACGEN AS+EFWI
Subjt:  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFWI

Query:  CCDIYEKWFHGKFVV
        CCDIYEKWFHGKFVV
Subjt:  CCDIYEKWFHGKFVV

A0A5A7VHJ0 PHD finger protein ALFIN-LIKE 3-like1.3e-3568.29Show/hide
Query:  FSMFFLCRRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGEN
        F+  F  RRRLFNIIND+PTVFEVVTNIAK+QVKEKSSTANGSKSKSSFK        S    ++  C + +Q +R++ + YEED+DEH D LCRACGEN
Subjt:  FSMFFLCRRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGEN

Query:  CASNEFWICCDIYEKWFHGKFVV
         AS+EFWICCDIYEKWFHGKFVV
Subjt:  CASNEFWICCDIYEKWFHGKFVV

A0A5D3BXQ0 PHD finger protein ALFIN-LIKE 3-like isoform X23.9e-3268.7Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        RRRLFN+INDLPTVFEVVT IAKKQVKEKSS+ANGSKSKSSFK        SR    +    + +Q        YEEDEDEHGDTLC ACGEN AS+EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCDI EKWFHGK V
Subjt:  ICCDIYEKWFHGKFV

SwissProt top hitse value%identityAlignment
A2WXR5 PHD finger protein ALFIN-LIKE 61.0e-2149.57Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        RRRLFN+IN+LPT+FEVVT  AKKQ KEK+  ++   +K S K        S   + KL   K  +GS       EE+ED+H +TLC  CG N   +EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCD  EKW+HGK V
Subjt:  ICCDIYEKWFHGKFV

O81488 PHD finger protein ALFIN-LIKE 47.8e-2250Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGS--KSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKR---YEEDEDEHGDTLCRACGENCA
        R+RLFN++NDLPT+FEVV   AKKQ K+KSS +N S  +SKSS K         R    + K  K       + +     EEDEDE G+T C ACGE+ A
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGS--KSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKR---YEEDEDEHGDTLCRACGENCA

Query:  SNEFWICCDIYEKWFHGKFV
        ++EFWICCD+ E WFHGK V
Subjt:  SNEFWICCDIYEKWFHGKFV

Q5XEM9 PHD finger protein ALFIN-LIKE 54.9e-2450.42Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTA--NGSKSKSSFKFIGYIFYLSRIFRVKLKCK--KCAQGSRRQGKRYEEDEDEHGDTLCRACGENCAS
        R+RLF++IN++PTV+EVVT  A+KQ KE  S+A  NG++SKS+ K  G     S+    K + +  +  +G   +    +EDEDEHG+TLC ACG+N AS
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTA--NGSKSKSSFKFIGYIFYLSRIFRVKLKCK--KCAQGSRRQGKRYEEDEDEHGDTLCRACGENCAS

Query:  NEFWICCDIYEKWFHGKFV
        +EFWICCD+ EKWFHG+ V
Subjt:  NEFWICCDIYEKWFHGKFV

Q7F2Z1 PHD finger protein ALFIN-LIKE 61.0e-2149.57Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        RRRLFN+IN+LPT+FEVVT  AKKQ KEK+  ++   +K S K        S   + KL   K  +GS       EE+ED+H +TLC  CG N   +EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCD  EKW+HGK V
Subjt:  ICCDIYEKWFHGKFV

Q9M2B4 PHD finger protein ALFIN-LIKE 32.9e-2447.83Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        R+RLFN+IND+PT+FEVVT +AK + K  ++  NG+KSKS+          S++   + K  K  Q      +  E+DED+HG+TLC ACG++  ++EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCD+ EKWFHGK V
Subjt:  ICCDIYEKWFHGKFV

Arabidopsis top hitse value%identityAlignment
AT1G14510.1 alfin-like 75.2e-2146.96Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        R+RLF +INDLPT+FEVVT  A KQ K++S+  N S+SKSS           R      K  K +   R++ +  +EDED+    +C ACG+N   +EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCD  EKWFHGK V
Subjt:  ICCDIYEKWFHGKFV

AT3G42790.1 alfin-like 32.0e-2547.83Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW
        R+RLFN+IND+PT+FEVVT +AK + K  ++  NG+KSKS+          S++   + K  K  Q      +  E+DED+HG+TLC ACG++  ++EFW
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEFW

Query:  ICCDIYEKWFHGKFV
        ICCD+ EKWFHGK V
Subjt:  ICCDIYEKWFHGKFV

AT5G05610.1 alfin-like 17.5e-2044.83Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKE-KSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEF
        R+RLF++INDLPT+FEVVT   +K +K+ K S   GSKS++  K         R    + K        +   + YE+++DEHGDTLC +CG N  ++EF
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKE-KSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENCASNEF

Query:  WICCDIYEKWFHGKFV
        WICCD+ E+W+HGK V
Subjt:  WICCDIYEKWFHGKFV

AT5G20510.1 alfin-like 53.5e-2550.42Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTA--NGSKSKSSFKFIGYIFYLSRIFRVKLKCK--KCAQGSRRQGKRYEEDEDEHGDTLCRACGENCAS
        R+RLF++IN++PTV+EVVT  A+KQ KE  S+A  NG++SKS+ K  G     S+    K + +  +  +G   +    +EDEDEHG+TLC ACG+N AS
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTA--NGSKSKSSFKFIGYIFYLSRIFRVKLKCK--KCAQGSRRQGKRYEEDEDEHGDTLCRACGENCAS

Query:  NEFWICCDIYEKWFHGKFV
        +EFWICCD+ EKWFHG+ V
Subjt:  NEFWICCDIYEKWFHGKFV

AT5G26210.1 alfin-like 45.6e-2350Show/hide
Query:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGS--KSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKR---YEEDEDEHGDTLCRACGENCA
        R+RLFN++NDLPT+FEVV   AKKQ K+KSS +N S  +SKSS K         R    + K  K       + +     EEDEDE G+T C ACGE+ A
Subjt:  RRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGS--KSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKR---YEEDEDEHGDTLCRACGENCA

Query:  SNEFWICCDIYEKWFHGKFV
        ++EFWICCD+ E WFHGK V
Subjt:  SNEFWICCDIYEKWFHGKFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTTGATCTTGCTATAAAATGTTTTTCCATGTTCTTTTTATGCAGGAGGCGGCTATTTAATATTATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCAATAT
TGCAAAGAAACAAGTTAAGGAAAAATCATCAACTGCAAATGGTAGCAAATCTAAGTCAAGTTTTAAATTTATTGGTTACATATTCTATCTTTCAAGAATTTTTAGAGTGA
AGCTGAAATGCAAGAAATGTGCGCAAGGCAGTCGCAGGCAAGGAAAGAGGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTGT
GCTTCAAATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGGAAATTTGTTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTTGATCTTGCTATAAAATGTTTTTCCATGTTCTTTTTATGCAGGAGGCGGCTATTTAATATTATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCAATAT
TGCAAAGAAACAAGTTAAGGAAAAATCATCAACTGCAAATGGTAGCAAATCTAAGTCAAGTTTTAAATTTATTGGTTACATATTCTATCTTTCAAGAATTTTTAGAGTGA
AGCTGAAATGCAAGAAATGTGCGCAAGGCAGTCGCAGGCAAGGAAAGAGGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTGT
GCTTCAAATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGGAAATTTGTTGTATGA
Protein sequenceShow/hide protein sequence
MMVDLAIKCFSMFFLCRRRLFNIINDLPTVFEVVTNIAKKQVKEKSSTANGSKSKSSFKFIGYIFYLSRIFRVKLKCKKCAQGSRRQGKRYEEDEDEHGDTLCRACGENC
ASNEFWICCDIYEKWFHGKFVV