; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0048471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0048471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr02:13961840..13962565
RNA-Seq ExpressionCmc02g0048471
SyntenyCmc02g0048471
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-12694.61Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLE+NLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        ANTQNKRQRISPNNNTYLWHLRLG+INL+RIG +VKNGLLNKL+D SLP CESC+EGKMTK+PFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL
        ID+YSRYGYLYLMEHKS+ALEKFKEYKTEVENLLSKKIKIL
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-12493.75Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLE+NLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        ANTQNKRQRISPNNNTYLWHLRLG+INL+RIG +VK+GLLNKL+D SLP CESC+EGKMTK+PFTGKGYRAKEPLELIHSDLCGPMNVKARG FEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKI
        ID+YSRYGYLYLMEHKS+ALEKFKEYKTEVENLLSKKIKI
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKI

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-9471.55Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        MT++VGTG VISA AVG  +L     F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++N+ FI KNGV ICSAKLE+NLYVLR   +KA+LN EMF+T
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        A TQNKR +ISP  N +LWHLRLG+INLNRI  +VKNGLL++LE++SLP CESC+EGKMTK+PFTGKG+RAKEPLEL+HSDLCGPMNVKARGGFEYFI+F
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIK
         D+YSRYGY+YLM+HKS+ALEKFKEYK EVEN LSK IK
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIK

KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-12392.53Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        M LKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSMNEAFISKNGVHICS KLEDNLYVL+PNE KAVLNHEMFRT
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        ANTQNKRQRIS NNNTYLWHLRLG+INL+RIG +VKNGLLNKLEDDSLP CESC+EGKMTK+PFTGKGYRAKEPLELIHSDLCGPMNVKA GGFEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL
        ID+YS YGYLYL+EHKS+ALEKFKEYKTEVENLLSKKIKIL
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL

KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-11890.87Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        MTL VGTGDVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSMNEAFISKNG     AKLEDNLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        ANTQNKRQRISPNNNTYLWHLRL +INL+RIG +VKNGLLNKL+DDSLP CESC+EGKMTK+PFTGK YRAKEPLELIHSDLCGPMNVKARGGFEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL
        ID+YSRYGYLYLMEHK +ALEKFKEYKTEVENLLSKKIKIL
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein7.2e-12593.75Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLE+NLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        ANTQNKRQRISPNNNTYLWHLRLG+INL+RIG +VK+GLLNKL+D SLP CESC+EGKMTK+PFTGKGYRAKEPLELIHSDLCGPMNVKARG FEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKI
        ID+YSRYGYLYLMEHKS+ALEKFKEYKTEVENLLSKKIKI
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKI

A0A5A7TYF5 Gag/pol protein1.7e-9471.55Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        MT++VGTG VISA AVG  +L     F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++N+ FI KNGV ICSAKLE+NLYVLR   +KA+LN EMF+T
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        A TQNKR +ISP  N +LWHLRLG+INLNRI  +VKNGLL++LE++SLP CESC+EGKMTK+PFTGKG+RAKEPLEL+HSDLCGPMNVKARGGFEYFI+F
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIK
         D+YSRYGY+YLM+HKS+ALEKFKEYK EVEN LSK IK
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIK

A0A5A7TZD0 Gag/pol protein1.3e-12694.61Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLE+NLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        ANTQNKRQRISPNNNTYLWHLRLG+INL+RIG +VKNGLLNKL+D SLP CESC+EGKMTK+PFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL
        ID+YSRYGYLYLMEHKS+ALEKFKEYKTEVENLLSKKIKIL
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL

A0A5A7VJG3 Gag/pol protein1.7e-11890.87Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        MTL VGTGDVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSMNEAFISKNG     AKLEDNLYVLRPNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        ANTQNKRQRISPNNNTYLWHLRL +INL+RIG +VKNGLLNKL+DDSLP CESC+EGKMTK+PFTGK YRAKEPLELIHSDLCGPMNVKARGGFEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL
        ID+YSRYGYLYLMEHK +ALEKFKEYKTEVENLLSKKIKIL
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL

A0A5D3BNE1 Gag/pol protein7.9e-12492.53Show/hide
Query:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        M LKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSMNEAFISKNGVHICS KLEDNLYVL+PNE KAVLNHEMFRT
Subjt:  MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        ANTQNKRQRIS NNNTYLWHLRLG+INL+RIG +VKNGLLNKLEDDSLP CESC+EGKMTK+PFTGKGYRAKEPLELIHSDLCGPMNVKA GGFEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL
        ID+YS YGYLYL+EHKS+ALEKFKEYKTEVENLLSKKIKIL
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.5e-1529.41Show/hide
Query:  LENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHIC-SAKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGYIN-
        LE++    +   NL+SV  L E   SI F  +   ISKNG+ +  ++ + +N+          V+N + + + N ++K       NN  LWH R G+I+ 
Subjt:  LENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHIC-SAKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGYIN-

Query:  -----LNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRA--KEPLELIHSDLCGPMNVKARGGFEYFISFIDNYSRYGYLYLMEHKSKAL
             + R        LLN LE  S   CE C+ GK  + PF     +   K PL ++HSD+CGP+         YF+ F+D ++ Y   YL+++KS   
Subjt:  -----LNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRA--KEPLELIHSDLCGPMNVKARGGFEYFISFIDNYSRYGYLYLMEHKSKAL

Query:  EKFKEYKTEVENLLSKKIKIL
          F+++  + E   + K+  L
Subjt:  EKFKEYKTEVENLLSKKIKIL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-1724.9Show/hide
Query:  TLKVGTGDVISARAVGDAKLFFG-NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT
        T+K+G         +GD  +       + L+++  VP ++ NL+S   L    Y   F+  +  ++K  + I        LY       +  LN      
Subjt:  TLKVGTGDVISARAVGDAKLFFG-NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
              +  IS +    LWH R+G+++   +  + K  L++  +  ++  C+ C+ GK  +  F     R    L+L++SD+CGPM +++ GG +YF++F
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL
        ID+ SR  ++Y+++ K +  + F+++   VE    +K+K L
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL

P93293 Uncharacterized mitochondrial protein AtMg003002.0e-0737.33Show/hide
Query:  NNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNV
        + T LWH RL +++   +  +VK G L+  +  SL  CE CI GK  +  F+   +  K PL+ +HSDL G  +V
Subjt:  NNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.4e-1425.73Show/hide
Query:  VGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMF
        V  G  I     G   L   ++ + L N+  VP I +NL+SV  L          +  +F + +      GV +   K +D LY     E     +  + 
Subjt:  VGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMF

Query:  RTANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLE-DDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYF
          A+  +K    S       WH RLG+   + + S++ N  L+ L        C  C+  K  K PF+     +  PLE I+SD+     + +   + Y+
Subjt:  RTANTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLE-DDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYF

Query:  ISFIDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKI
        + F+D+++RY +LY ++ KS+  E F  +K  +EN    +I
Subjt:  ISFIDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.2e-1428.22Show/hide
Query:  VGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEAFIS--KNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRTA
        +  G  I     G A L   ++ + L  +  VP I +NL+SV  L   +  S+ F      +     GV +   K +D LY      ++AV    MF  A
Subjt:  VGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEAFIS--KNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRTA

Query:  NTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLE-DDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF
        +  +K    S       WH RLG+ +L  + S++ N  L  L     L  C  C   K  K PF+     + +PLE I+SD+     + +   + Y++ F
Subjt:  NTQNKRQRISPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLE-DDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISF

Query:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL
        +D+++RY +LY ++ KS+  + F  +K+ VEN    +I  L
Subjt:  IDNYSRYGYLYLMEHKSKALEKFKEYKTEVENLLSKKIKIL

Arabidopsis top hitse value%identityAlignment
ATMG00300.1 Gag-Pol-related retrotransposon family protein1.4e-0837.33Show/hide
Query:  NNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNV
        + T LWH RL +++   +  +VK G L+  +  SL  CE CI GK  +  F+   +  K PL+ +HSDL G  +V
Subjt:  NNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCC
TAAAATTAAAAGGAACTTAGTTTCTGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTT
CAGCTAAGCTTGAAGACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATT
TCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTTACATAAATCTCAATCGGATCGGGAGCATGGTAAAGAATGGACTTCTAAACAAGTTAGAAGATGATTC
ATTACCTCAATGTGAATCTTGTATTGAAGGTAAAATGACAAAGAAACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTG
GTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGACAATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTAAAGCTCTT
GAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCC
TAAAATTAAAAGGAACTTAGTTTCTGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTT
CAGCTAAGCTTGAAGACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATT
TCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTTACATAAATCTCAATCGGATCGGGAGCATGGTAAAGAATGGACTTCTAAACAAGTTAGAAGATGATTC
ATTACCTCAATGTGAATCTTGTATTGAAGGTAAAATGACAAAGAAACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTG
GTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGACAATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTAAAGCTCTT
GAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTGA
Protein sequenceShow/hide protein sequence
MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRI
SPNNNTYLWHLRLGYINLNRIGSMVKNGLLNKLEDDSLPQCESCIEGKMTKKPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDNYSRYGYLYLMEHKSKAL
EKFKEYKTEVENLLSKKIKIL