; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0048751 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0048751
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr02:14319971..14320291
RNA-Seq ExpressionCmc02g0048751
SyntenyCmc02g0048751
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025159.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-4792.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKIILKYLRRTRDYMLVYGAKDLILTGYTDS FQTDKDSRKST  SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-4892.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKI+LKYLRRTRDYMLVYGAKDLILTGYTDS FQTDKDSRKSTS SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-4792.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKIILKYLRRTRDYMLVYGAKDLILTGYT+S FQTDKDSRKSTS SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-4792.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMY MLCTRPDICYAVGIVSRYQSNPGLDHWT VKIILKYLRRTRDYMLVYGAKDLILTGYTDS FQTDKDSRKSTS SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-4892.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKI+LKYLRRTRDYMLVYGAKDLILTGYTDS FQTDKDSRKSTS SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

TrEMBL top hitse value%identityAlignment
A0A5A7SIN2 Gag/pol protein1.2e-4792.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKIILKYLRRTRDYMLVYGAKDLILTGYTDS FQTDKDSRKST  SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

A0A5A7T2V9 Gag/pol protein5.3e-4892.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKIILKYLRRTRDYMLVYGAKDLILTGYT+S FQTDKDSRKSTS SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

A0A5A7TKM4 Gag/pol protein6.9e-4892.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMY MLCTRPDICYAVGIVSRYQSNPGLDHWT VKIILKYLRRTRDYMLVYGAKDLILTGYTDS FQTDKDSRKSTS SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

A0A5A7TZD0 Gag/pol protein3.1e-4892.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKI+LKYLRRTRDYMLVYGAKDLILTGYTDS FQTDKDSRKSTS SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

A0A5A7UYE8 Gag/pol protein3.1e-4892.45Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        MRRIPYAS VG LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKI+LKYLRRTRDYMLVYGAKDLILTGYTDS FQTDKDSRKSTS SVFTLNG  V
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRSIK
        VWRSIK
Subjt:  VWRSIK

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.8e-1137.5Show/hide
Query:  PYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYG---AKDLILTGYTDSYFQTDKDSRKSTSESVFTL-NGEVV
        P  S +G LMY MLCTRPD+  AV I+SRY S    + W  +K +L+YL+ T D  L++    A +  + GY DS +   +  RKST+  +F + +  ++
Subjt:  PYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYG---AKDLILTGYTDSYFQTDKDSRKSTSESVFTL-NGEVV

Query:  VWRS
         W +
Subjt:  VWRS

P0CV72 Secreted RxLR effector protein 1618.5e-1944.86Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVY-GAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEV
        M+ +PY S VG +MY M+ TRPD+  AVG++S++ S+P   HW  +K +L+YL+ T+ Y L +  A    L GY+D+ +  D +SR+STS  +F LNG  
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVY-GAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEV

Query:  VVWRSIK
        V WRS K
Subjt:  VVWRSIK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.4e-2652.88Show/hide
Query:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV
        M ++PY+S VG LMYAM+CTRPDI +AVG+VSR+  NPG +HW  VK IL+YLR T    L +G  D IL GYTD+    D D+RKS++  +FT +G  +
Subjt:  MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVV

Query:  VWRS
         W+S
Subjt:  VWRS

P25600 Putative transposon Ty5-1 protein YCL074W8.8e-0836.89Show/hide
Query:  PYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVY-GAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVWR
        PY S VG L++     RPDI Y V ++SR+   P   H    + +L+YL  TR   L Y     L LT Y D+      D   ST   V  L G  V W 
Subjt:  PYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVY-GAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVWR

Query:  SIK
        S K
Subjt:  SIK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.3e-0835.29Show/hide
Query:  YASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDY-MLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVWRS
        Y   VG L Y +  TRPD+ YAV  +S+Y   P  DHW  +K +L+YL  T D+ + +     L L  Y+D+ +  D D   ST+  +  L    + W S
Subjt:  YASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDY-MLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVWRS

Query:  IK
         K
Subjt:  IK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.4e-0834.31Show/hide
Query:  YASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAK-DLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVWRS
        Y   +G LMY  + TR DI +AV  +S++   P L H   V  IL Y++ T    L Y ++ ++ L  ++D+ FQ+ KD+R+ST+     L   ++ W+S
Subjt:  YASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAK-DLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVWRS

Query:  IK
         K
Subjt:  IK

ATMG00810.1 DNA/RNA polymerases superfamily protein2.5e-0530.61Show/hide
Query:  YASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDY-MLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVW
        + S VG L Y  L TRPDI YAV IV +    P L  + ++K +L+Y++ T  + + ++    L +  + DS +     +R+ST+     L   ++ W
Subjt:  YASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDY-MLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACGTATTCCCTATGCCTCAACTGTGGGCATCTTAATGTATGCTATGCTCTGTACTAGGCCAGACATTTGTTATGCTGTGGGAATAGTCAGTAGGTATCAGTCCAA
CCCAGGGTTAGACCACTGGACGGTGGTTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACA
CTGATTCTTATTTCCAAACCGATAAGGATTCTAGGAAATCCACATCGGAATCAGTGTTCACCCTAAATGGAGAAGTTGTAGTATGGCGTAGCATCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACGTATTCCCTATGCCTCAACTGTGGGCATCTTAATGTATGCTATGCTCTGTACTAGGCCAGACATTTGTTATGCTGTGGGAATAGTCAGTAGGTATCAGTCCAA
CCCAGGGTTAGACCACTGGACGGTGGTTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACA
CTGATTCTTATTTCCAAACCGATAAGGATTCTAGGAAATCCACATCGGAATCAGTGTTCACCCTAAATGGAGAAGTTGTAGTATGGCGTAGCATCAAGTAA
Protein sequenceShow/hide protein sequence
MRRIPYASTVGILMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTVVKIILKYLRRTRDYMLVYGAKDLILTGYTDSYFQTDKDSRKSTSESVFTLNGEVVVWRSIK