CuGenDBv2

Gene ID	Cmc02g0050111
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr02:16099618..16100016
RNA-Seq Expression	Cmc02g0050111
Synteny	Cmc02g0050111
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047414.1 gag/pol protein [Cucumis melo var. makuwa]

2.7e-43

88.57

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Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        M VYGSKD+ILT  TDSDFQS+K+ARKSTSGS+FTLNGGAVVWRSIKQS IADS MEAEYVAACEAAKE VWLKKFLIDLEI+ NMHLPITLYCDNSGAV
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRE
        ANSRE
Subjt:  ANSRE

KAA0047751.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-48

81.68

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Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        M VYGSKDLILT  T+SDFQ++K+ARKSTSGSVFTLNGGA+VWRSIKQSCIADS MEAEYVAACEA K  VWLKKFLIDLE++ NMHLPITLYCDNSGAV
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRELEIINEESTLNKSTILSEKSYIEEML
        ANSRE    N ESTLN+STILS KSYI E L
Subjt:  ANSRELEIINEESTLNKSTILSEKSYIEEML

KAA0054391.1 gag/pol protein [Cucumis melo var. makuwa]

3.5e-43

73.48

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Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        + VYGSKDLILTR TDSDFQ++K+ARKSTS SV TLNG AVVWRSIKQSCI D  MEAEYVAACEAAKE VWLKKFL DLE++ NMHLPITL+CDNSGAV
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ
         NSREL        + +   LS KSYIEE LQ
Subjt:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ

KAA0067886.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-44

75.76

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Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        M VYGSKDLILT  TDSDFQ++K+ARKSTS SVFTLNG AVVWRSIKQS IADS MEAEYVAACEAAKE VWLKKFL DLE++ NMHLPITLYC     +
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ
             LE+IN ESTLN+STILS KSY+EE LQ
Subjt:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ

TYK04328.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-44

75.76

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Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        M VYGSKDLILT  TDSDFQ++K+ARKSTS SVFTLNG AVVWRSIKQS IADS MEAEYVAACEAAKE VWLKKFL DLE++ NMHLPITLYC     +
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ
             LE+IN ESTLN+STILS KSY+EE LQ
Subjt:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7ULH5 Gag/pol protein

1.7e-43

73.48

Show/hide

Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        + VYGSKDLILTR TDSDFQ++K+ARKSTS SV TLNG AVVWRSIKQSCI D  MEAEYVAACEAAKE VWLKKFL DLE++ NMHLPITL+CDNSGAV
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ
         NSREL        + +   LS KSYIEE LQ
Subjt:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ

A0A5A7VMU7 Gag/pol protein

3.4e-44

75.76

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Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        M VYGSKDLILT  TDSDFQ++K+ARKSTS SVFTLNG AVVWRSIKQS IADS MEAEYVAACEAAKE VWLKKFL DLE++ NMHLPITLYC     +
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ
             LE+IN ESTLN+STILS KSY+EE LQ
Subjt:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ

A0A5D3BT79 Gag/pol protein

1.0e-48

81.68

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Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        M VYGSKDLILT  T+SDFQ++K+ARKSTSGSVFTLNGGA+VWRSIKQSCIADS MEAEYVAACEA K  VWLKKFLIDLE++ NMHLPITLYCDNSGAV
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRELEIINEESTLNKSTILSEKSYIEEML
        ANSRE    N ESTLN+STILS KSYI E L
Subjt:  ANSRELEIINEESTLNKSTILSEKSYIEEML

A0A5D3BZ86 Gag/pol protein

3.4e-44

75.76

Show/hide

Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        M VYGSKDLILT  TDSDFQ++K+ARKSTS SVFTLNG AVVWRSIKQS IADS MEAEYVAACEAAKE VWLKKFL DLE++ NMHLPITLYC     +
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ
             LE+IN ESTLN+STILS KSY+EE LQ
Subjt:  ANSRELEIINEESTLNKSTILSEKSYIEEMLQ

A0A5D3CV18 Gag/pol protein

1.3e-43

88.57

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Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        M VYGSKD+ILT  TDSDFQS+K+ARKSTSGS+FTLNGGAVVWRSIKQS IADS MEAEYVAACEAAKE VWLKKFLIDLEI+ NMHLPITLYCDNSGAV
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Query:  ANSRE
        ANSRE
Subjt:  ANSRE

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.1e-07

36.78

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Query:  DSDFQSNKNARKSTSGSVFTL-NGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVA
        DSD+  ++  RKST+G +F + +   + W + +Q+ +A S  EAEY+A  EA +E +WLK  L  + I   +  PI +Y DN G ++
Subjt:  DSDFQSNKNARKSTSGSVFTL-NGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVA

P0CV72 Secreted RxLR effector protein 161

2.9e-08

50.85

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Query:  TDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWL
        +D+D+  +  +R+STSG +F LNGG V WRS KQ  +A S  E EY+A  EA +E VWL
Subjt:  TDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.4e-16

42.57

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Query:  YGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANS
        +G  D IL   TD+D   + + RKS++G +FT +GGA+ W+S  Q C+A S  EAEY+AA E  KE +WLK+FL +L + Q  ++   +YCD+  A+  S
Subjt:  YGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANS

Query:  R
        +
Subjt:  R

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

4.1e-10

Show/hide

Query:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV
        +F     ++ L   +D+ FQS K+ R+ST+G    L    + W+S KQ  ++ S  EAEY A   A  E +WL +F  +L++   +  P  L+CDN+ A+
Subjt:  MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV

Sequences

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CDS sequence

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ATGTTTGTGTATGGTTCTAAGGATCTGATCCTTACTAGAAACACTGACTCTGATTTTCAATCTAATAAAAATGCTAGAAAGTCTACGTCGGGATCAGTTTTCACTCTGAA
TGGAGGAGCAGTAGTATGGAGAAGTATAAAACAATCCTGTATTGCTGACTCCATTATGGAAGCTGAATATGTAGCAGCCTGTGAAGCAGCAAAGGAAAAAGTATGGCTTA
AAAAGTTCTTAATAGATTTGGAAATTATTCAAAATATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCACGAGAATTAGAAATCATAAAT
GAGGAAAGCACATTGAACAAAAGTACCATCTTATCCGAGAAATCGTACATCGAGGAGATGTTACAGTAA

mRNA sequence

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Protein sequence

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MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIIN
EESTLNKSTILSEKSYIEEMLQ

Cmc02g0050111 (gene) of Melon (Charmono) v1.1 genome