CuGenDBv2

Gene ID	Cmc02g0050161
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr02:16193013..16193525
RNA-Seq Expression	Cmc02g0050161
Synteny	Cmc02g0050161
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

5.8e-83

91.76

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYG KDLIL GYTDSDFQTDKD RKSTSGSVFTLN   VVWR IKQGCI DS ME EYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPR+HKRGKHIERKYHLIREIVQRGD+IVTKIASEHNI DPFTKTLTAKVFEGHLESLG RDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

5.8e-83

91.76

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYG KDLIL GYTDSDFQTDKD RKSTSGSVFTLN   VVWR IKQGCI DS ME EYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPR+HKRGKHIERKYHLIREIVQRGD+IVTKIASEHNI DPFTKTLTAKVFEGHLESLG RDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

KAA0043390.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

6.8e-92

98.82

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACE AKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLES+GPRDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

4.4e-83

91.76

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYG KDLIL GYTDSDFQTDKD RKSTSGSVFTLNE  VVWR IKQGCI DS ME EYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPR+HKRGKHIERKYHLIREIVQRGD+IVTKIASEHNI DPFTK LTAKVFEGHLESLG RDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

TYK11980.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

3.4e-91

98.82

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYGEKDLILIGYTDSDFQ DKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYV ACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TJD0 Retrovirus-related pol polyprotein from transposon tnt 1-94

3.3e-92

98.82

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACE AKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLES+GPRDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

A0A5A7TZD0 Gag/pol protein

2.8e-83

91.76

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYG KDLIL GYTDSDFQTDKD RKSTSGSVFTLN   VVWR IKQGCI DS ME EYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPR+HKRGKHIERKYHLIREIVQRGD+IVTKIASEHNI DPFTKTLTAKVFEGHLESLG RDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

A0A5A7UYE8 Gag/pol protein

2.8e-83

91.76

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYG KDLIL GYTDSDFQTDKD RKSTSGSVFTLN   VVWR IKQGCI DS ME EYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPR+HKRGKHIERKYHLIREIVQRGD+IVTKIASEHNI DPFTKTLTAKVFEGHLESLG RDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

A0A5A7V1F5 Gag/pol protein

2.1e-83

91.76

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYG KDLIL GYTDSDFQTDKD RKSTSGSVFTLNE  VVWR IKQGCI DS ME EYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPR+HKRGKHIERKYHLIREIVQRGD+IVTKIASEHNI DPFTK LTAKVFEGHLESLG RDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

A0A5D3CKN7 Retrovirus-related pol polyprotein from transposon tnt 1-94

1.6e-91

98.82

Show/hide

Query:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
        MLVYGEKDLILIGYTDSDFQ DKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYV ACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV
Subjt:  MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAV

Query:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
        ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR
Subjt:  ANSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.7e-21

37.01

Show/hide

Query:  LIGYTDSDFQTDKDFRKSTSGSVFTLNE-RVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRNH
        +IGY DSD+   +  RKST+G +F + +  ++ W   +Q  +  S  E EY+A  EA +EA+WL+  L  + +   +  PI +Y DN G ++ +  P  H
Subjt:  LIGYTDSDFQTDKDFRKSTSGSVFTLNE-RVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRNH

Query:  KRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLG
        KR KHI+ KYH  RE VQ   + +  I +E+ + D FTK L A  F    + LG
Subjt:  KRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLG

P0CV72 Secreted RxLR effector protein 161

1.3e-08

49.21

Show/hide

Query:  LIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWL
        L+GY+D+D+  D + R+STSG +F LN   V WR  KQ  +  S  E EY+A  EA +EAVWL
Subjt:  LIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.7e-25

38.89

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Query:  LVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVA
        L +G  D IL GYTD+D   D D RKS++G +FT +   + W+   Q C+  S  E EY+AA E  KE +WL++FL +L +         +YCD+  A+ 
Subjt:  LVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVA

Query:  NSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLG
         SK    H R KHI+ +YH IRE+V    + V KI++  N  D  TK +    FE   E +G
Subjt:  NSKEPRNHKRGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLG

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.9e-14

35.14

Show/hide

Query:  YTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRNHKRGK
        ++D+ FQ+ KD R+ST+G    L   ++ W+  KQ  +  S  E EY A   A  E +WL +F  +L++   ++ P  L+CDN+ A+  +     H+R K
Subjt:  YTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRNHKRGK

Query:  HIERKYHLIRE
        HIE   H +RE
Subjt:  HIERKYHLIRE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTGTGTATGGAGAAAAGGATTTGATCCTTATAGGATACACTGATTCTGATTTCCAAACTGATAAGGATTTTAGGAAATCCACATCGGGATCAGTGTTCACCCTAAA
TGAGAGAGTTGTAGTATGGCGTTGCATCAAGCAAGGATGCATTGTAGACTCTATAATGGAGGTTGAATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTA
GGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAACCACAAA
CGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGAGAGATTGTGCAACGAGGGGATATGATCGTCACCAAGATCGCTTCGGAGCACAACATTGTTGATCCATTTAC
GAAGACTCTGACGGCTAAAGTGTTCGAGGGTCATCTAGAAAGTCTAGGTCCACGAGATATGTACATTAGGTAA

mRNA sequence

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Protein sequence

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MLVYGEKDLILIGYTDSDFQTDKDFRKSTSGSVFTLNERVVVWRCIKQGCIVDSIMEVEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRNHK
RGKHIERKYHLIREIVQRGDMIVTKIASEHNIVDPFTKTLTAKVFEGHLESLGPRDMYIR

Cmc02g0050161 (gene) of Melon (Charmono) v1.1 genome