; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0050181 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0050181
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPol protein
Genome locationCMiso1.1chr02:16214911..16215669
RNA-Seq ExpressionCmc02g0050181
SyntenyCmc02g0050181
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035938.1 pol protein [Cucumis melo var. makuwa]1.8e-14497.62Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIP+WKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWD+HLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

KAA0040699.1 pol protein [Cucumis melo var. makuwa]1.0e-14498.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKR+VAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG+RLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

KAA0047043.1 pol protein [Cucumis melo var. makuwa]1.8e-14498.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIP+WKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQS NEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

KAA0051368.1 pol protein [Cucumis melo var. makuwa]1.8e-14497.62Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIP+WKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

KAA0065438.1 pol protein [Cucumis melo var. makuwa]1.8e-14498.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIP+WKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TI MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

TrEMBL top hitse value%identityAlignment
A0A5A7SZD6 Pol protein8.5e-14597.62Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIP+WKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWD+HLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

A0A5A7THF3 Reverse transcriptase5.0e-14598.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKR+VAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG+RLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

A0A5A7TU00 Pol protein8.5e-14598.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIP+WKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQS NEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

A0A5A7U7V9 Reverse transcriptase8.5e-14597.62Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIP+WKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

A0A5A7VCT0 Pol protein8.5e-14598.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIP+WKWENVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA
        TI MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTA
Subjt:  TIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.6e-3936.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   +  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTE  NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALY
           M PFE ++
Subjt:  TIGMAPFEALY

P0CT41 Transposon Tf2-12 polyprotein4.6e-3936.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   +  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTE  NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALY
           M PFE ++
Subjt:  TIGMAPFEALY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.2e-4033.99Show/hide
Query:  HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYT
        H G T     +  +Y+W  ++  + +++  C+ CQ +K+ R +  GLLQPL I + +W ++SMDF+TGLP T     +I VVVDR +K AHF+  + T  
Subjt:  HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYT

Query:  ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT
        A++   L    I   HG P +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+E   Q L  +LRA       +W  +L  +EF YN++   T
Subjt:  ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT

Query:  IGMAPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEAILKIRSRMHTA
        +G +PFE   G    +P      EV  +     EL +      ++ + ++  A
Subjt:  IGMAPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEAILKIRSRMHTA

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.4e-4034.39Show/hide
Query:  HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYT
        H G T     +  +Y+W  ++  + +++  C+ CQ +K+ R +  GLLQPL I + +W ++SMDF+TGLP T     +I VVVDR +K AHF+  + T  
Subjt:  HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYT

Query:  ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT
        A++   L    I   HG P +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+E   Q L  +LRA A     +W  +L  +EF YN++   T
Subjt:  ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT

Query:  IGMAPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEAILKIRSRMHTA
        +G +PFE   G    +P      EV  +     EL +      ++ + ++  A
Subjt:  IGMAPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEAILKIRSRMHTA

Q9UR07 Transposon Tf2-11 polyprotein4.6e-3936.02Show/hide
Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   +  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTE  NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALY
           M PFE ++
Subjt:  TIGMAPFEALY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCA
GGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGAAATGGAAGTGGGAAAACGTATCCATGGATTTCATTACAGGACTGCCGAGAACTC
CGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATG
TCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACGGCTATGGGAACGAGGTT
AGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCATCTGAACCAAGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGG
ACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGC
TGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATATTGAAGATTAGATCACGCATGCATACCGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCA
GGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGAAATGGAAGTGGGAAAACGTATCCATGGATTTCATTACAGGACTGCCGAGAACTC
CGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATG
TCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACGGCTATGGGAACGAGGTT
AGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCATCTGAACCAAGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGG
ACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGC
TGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATATTGAAGATTAGATCACGCATGCATACCGCTTAG
Protein sequenceShow/hide protein sequence
MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM
SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC
WGEVGEQRLMGPELVQSTNEAILKIRSRMHTA