; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0050731 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0050731
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr02:17013621..17014490
RNA-Seq ExpressionCmc02g0050731
SyntenyCmc02g0050731
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]2.1e-15495.76Show/hide
Query:  YNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVA
        YNQIKMAPEDQEKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKEIEVYVDDM+AKSRLEEKHVVTLRKLFE LRKFQLKLNPAKC FGV+
Subjt:  YNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVA

Query:  SGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR
        S KLLGFIVSREGIKVDPDKI+AIVDLRPPKTQKEVRSFLGRLNY ARFIS+LTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR
Subjt:  SGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR

Query:  PLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PLI  LTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
Subjt:  PLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.5e-13682.35Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        MDGFSGYN+IKMAPED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKEIEVYVDDMIAKSR  E+H + LRKLFERLRKFQLKLNP K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        C FGV SGKLLGF+V +EGIKVDPDK+KAI+++ PPKT KEVR FLGRLNYIARFIS+LT TCEPI KLLRKN    W EDCQ AFDKIK Y QSPPILV
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PPT GRPLILYLT+ E SMGCVLGQHD +G+KEQA+YYLSKKFT+ E+ YS +EKTCCALAW   RLRQYMLYYTTWLISKMDPIKYIF
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]2.2e-13580.62Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        MDGFSGYNQIKMA ED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHD+MHKEIEVYVDDMIAKS+  E H   L+KLF+RLRK+QLKLNP+K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        C FG  SGKLLGFIVS EGIKVDPDK+KAI+D+  P+T+KEVR+FLGRLNYI+RFIS+LT TCEPI KLLRKN    WNEDC++AF+KIK YLQSPP+L+
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PP PGRPLILYLTV EGSMG VLGQHD +GKKE A+YYLSKKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIF
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]2.2e-13580.62Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        MDGFSGYNQIKMA ED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHD+MHKEIEVYVDDMIAKS+  E H   L+KLF+RLRK+QLKLNP+K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        C FG  SGKLLGFIVS EGIKVDPDK+KAI+D+  P+T+KEVR+FLGRLNYI+RFIS+LT TCEPI KLLRKN    WNEDC++AF+KIK YLQSPP+L+
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PP PGRPLILYLTV EGSMG VLGQHD +GKKE A+YYLSKKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIF
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]2.2e-13580.62Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        MDGFSGYNQIKMA ED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHD+MHKEIEVYVDDMIAKS+  E H   L+KLF+RLRK+QLKLNP+K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        C FG  SGKLLGFIVS EGIKVDPDK+KAI+D+  P+T+KEVR+FLGRLNYI+RFIS+LT TCEPI KLLRKN    WNEDC++AF+KIK YLQSPP+L+
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PP PGRPLILYLTV EGSMG VLGQHD +GKKE A+YYLSKKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIF
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

TrEMBL top hitse value%identityAlignment
A0A5A7VAU5 Uncharacterized protein1.0e-15495.76Show/hide
Query:  YNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVA
        YNQIKMAPEDQEKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKEIEVYVDDM+AKSRLEEKHVVTLRKLFE LRKFQLKLNPAKC FGV+
Subjt:  YNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVA

Query:  SGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR
        S KLLGFIVSREGIKVDPDKI+AIVDLRPPKTQKEVRSFLGRLNY ARFIS+LTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR
Subjt:  SGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR

Query:  PLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PLI  LTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
Subjt:  PLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

A0A6J1D099 Ribonuclease H2.7e-13480.62Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        MDGFSGYNQIKMAPED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKEIEVYVDDMIAKS+  E+H   LRKLF+RLRKF+LKLN  K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        CIFG  +GKLLGF+VS+EGIKVDPDK+KAI+++ PP+TQKEVR FLGRLNYIARFIS+LT TCEPI KLLRKN     +EDCQ AFDK+K YLQ PP+LV
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PPTPGR LILYLTV E SMGCVLGQHD +G+KEQA+YYLSKKFT+ E++YS +EKTCCALAW  +RLRQYMLYYTTWLISKMDPIKYIF
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.2e-13682.35Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        MDGFSGYN+IKMAPED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKEIEVYVDDMIAKSR  E+H + LRKLFERLRKFQLKLNP K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        C FGV SGKLLGF+V +EGIKVDPDK+KAI+++ PPKT KEVR FLGRLNYIARFIS+LT TCEPI KLLRKN    W EDCQ AFDKIK Y QSPPILV
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PPT GRPLILYLT+ E SMGCVLGQHD +G+KEQA+YYLSKKFT+ E+ YS +EKTCCALAW   RLRQYMLYYTTWLISKMDPIKYIF
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

A0A6J1DZ90 Ribonuclease H2.0e-13480.62Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        M GFSG N IKMAPED+EKTTFITLWGTFCYKVM FGLKN GA YQRAMVTLFHDLMHKEIEVYVDDMIAKS+  E+H   LRKLF+RLRKF+LKLNP K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        CIFG  +GKLLGF+VS+EGIKVDPDK+KAI+++ PP+TQKEVR FLGRLNYIARFIS+LT TCEPI KLLRKN    W+EDCQ AF+KIK YLQ PPILV
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PPTPGRPLILYLTV E SMGCVLGQHD +G+KEQA+YYLSKKFT+ E++YS +EKTCCALAW  +RLRQYMLYYTTWLISKMDPIKYIF
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

A0A6J1E2J7 Ribonuclease H4.1e-13581.31Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        MDGFSGYNQIKMAPED+EKTT ITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKEIEVYVDDMIAKS+  E+H   LRKLF+RLRKF+LKLNP K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        CIFG  +GKLLGF+VS+E IKVD DK+KAI+++ PP+TQKEVR FLGRLNYIAR IS+LT TCEPI KLLRKN    W+EDCQ AFDKIK YLQ PPILV
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
        PPTPGRPLILYLTV E SMGCVLGQHD +G+KEQA+YYLSKKFT+ E++YS +EKTCCALAW T+RLRQYMLYYTTWLISKMDPIKYIF
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.6e-3833.79Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        +D   G++QI+M PE   KT F T  G + Y  M FGLKNA A +QR M  +   L++K   VY+DD+I  S   ++H+ +L  +FE+L K  LKL   K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKN-EICHWNEDCQKAFDKIKDYLQSPPIL
        C F       LG +++ +GIK +P+KI+AI     P   KE+++FLG   Y  +FI       +P+ K L+KN +I   N +   AF K+K  +   PIL
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKN-EICHWNEDCQKAFDKIKDYLQSPPIL

Query:  VPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
          P   +   L     + ++G VL Q          + Y+S+    +E  YS +EK   A+ W T+  R Y+L     + S   P+ +++
Subjt:  VPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

P0CT41 Transposon Tf2-12 polyprotein1.2e-3029.41Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        +D  S Y+ I++   D+ K  F    G F Y VM +G+  A A +Q  + T+  +     +  Y+DD++  S+ E +HV  ++ + ++L+   L +N AK
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV
        C F  +  K +G+ +S +G     + I  ++  + PK +KE+R FLG +NY+ +FI   +Q   P+  LL+K+    W     +A + IK  L SPP+L 
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILV

Query:  PPTPGRPLILYLTVKEGSMGCVLGQ-HDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYM
             + ++L     + ++G VL Q HD    K   V Y S K +  +  YS+ +K   A+  + +  R Y+
Subjt:  PPTPGRPLILYLTVKEGSMGCVLGQ-HDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYM

P20825 Retrovirus-related Pol polyprotein from transposon 2977.9e-3532.18Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        +D   G++QI+M  E   KT F T  G + Y  M FGL+NA A +QR M  +   L++K   VY+DD+I  S    +H+ +++ +F +L    LKL   K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRK-NEICHWNEDCQKAFDKIKDYLQSPPIL
        C F       LG IV+ +GIK +P K+KAIV    P   KE+R+FLG   Y  +FI       +P+   L+K  +I     +  +AF+K+K  +   PIL
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRK-NEICHWNEDCQKAFDKIKDYLQSPPIL

Query:  VPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYI
          P   +  +L       ++G VL Q+         + ++S+   ++E  YS +EK   A+ W T+  R Y+L     + S   P++++
Subjt:  VPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.0e-3331.91Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        +D  SG++QI M   D  KT F TL G + +  + FGLKNA AI+QR +  +  + + K   VY+DD+I  S   + H   LR +   L K  L++N  K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLR-----------KNEICHWNEDCQKAFDKI
          F     + LG+IV+ +GIK DP K++AI ++ PP + KE++ FLG  +Y  +FI    +  +P+  L R                  +E   ++F+ +
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLR-----------KNEICHWNEDCQKAFDKI

Query:  KDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYM
        K  L S  IL  P   +P  L       ++G VL Q D    +++ + Y+S+     E  Y+ +EK   A+ W+   LR Y+
Subjt:  KDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYM

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.4e-3134.31Show/hide
Query:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK
        +D  SGY+QI M P+D+ KT F+T  G + Y VM FGL NA + + R M   F DL  + + VY+DD++  S   E+H   L  + ERL+   L +   K
Subjt:  MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAK

Query:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPI-LKLLRKNEICHWNEDCQKAFDKIKDYLQSPPIL
        C F     + LG+ +  + I     K  AI D   PKT K+ + FLG +NY  RFI   ++  +PI L +  K++   W E   KA DK+KD L + P+L
Subjt:  CIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPI-LKLLRKNEICHWNEDCQKAFDKIKDYLQSPPIL

Query:  VPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLY
        VP        L     +  +G VL + D+  K    V Y SK   + +  Y   E     +       R YML+
Subjt:  VPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLY

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-1234.45Show/hide
Query:  QLKLNPAKCIFGVASGKLLG--FIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIK
        Q   N  KC FG      LG   I+S EG+  DP K++A+V    PK   E+R FLG   Y  RF+    +   P+ +LL+KN +  W E    AF  +K
Subjt:  QLKLNPAKCIFGVASGKLLG--FIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIK

Query:  DYLQSPPILVPPTPGRPLI
          + + P+L  P    P +
Subjt:  DYLQSPPILVPPTPGRPLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAACGACATTCATCACCTTGTGGGGAACGTTCTGCTATAAAGTAATGCGT
TTTGGGTTAAAAAATGCAGGAGCAATTTATCAGAGAGCGATGGTTACATTATTCCATGACTTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATGATTGCC
AAGTCCAGACTCGAAGAAAAGCATGTGGTTACCCTTCGTAAGCTTTTTGAACGTTTGCGAAAGTTCCAATTAAAGTTGAATCCAGCAAAATGCATATTTGGAGTT
GCTTCTGGGAAGTTATTGGGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCAAGGCTATAGTTGACTTAAGGCCACCAAAAACACAAAAG
GAGGTTAGAAGTTTTTTAGGAAGGTTGAATTACATTGCAAGATTTATTTCATACCTTACTCAAACTTGTGAGCCAATTTTAAAATTGCTTCGAAAAAATGAGATT
TGTCATTGGAATGAAGATTGCCAAAAAGCTTTTGACAAGATCAAAGACTACTTGCAAAGCCCTCCTATCCTCGTTCCGCCAACTCCAGGACGACCTTTGATCTTA
TACTTGACAGTGAAGGAGGGGTCAATGGGATGTGTGCTGGGACAACATGACTCTACTGGAAAGAAAGAGCAAGCTGTCTATTATTTGAGCAAGAAGTTCACGAAT
TATGAATCAAAATACTCATTGTTGGAAAAAACATGTTGTGCTTTAGCATGGACGACTCAAAGATTAAGACAGTATATGTTATACTATACTACATGGCTTATTTCA
AAAATGGATCCTATAAAATACATTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAACGACATTCATCACCTTGTGGGGAACGTTCTGCTATAAAGTAATGCGT
TTTGGGTTAAAAAATGCAGGAGCAATTTATCAGAGAGCGATGGTTACATTATTCCATGACTTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATGATTGCC
AAGTCCAGACTCGAAGAAAAGCATGTGGTTACCCTTCGTAAGCTTTTTGAACGTTTGCGAAAGTTCCAATTAAAGTTGAATCCAGCAAAATGCATATTTGGAGTT
GCTTCTGGGAAGTTATTGGGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCAAGGCTATAGTTGACTTAAGGCCACCAAAAACACAAAAG
GAGGTTAGAAGTTTTTTAGGAAGGTTGAATTACATTGCAAGATTTATTTCATACCTTACTCAAACTTGTGAGCCAATTTTAAAATTGCTTCGAAAAAATGAGATT
TGTCATTGGAATGAAGATTGCCAAAAAGCTTTTGACAAGATCAAAGACTACTTGCAAAGCCCTCCTATCCTCGTTCCGCCAACTCCAGGACGACCTTTGATCTTA
TACTTGACAGTGAAGGAGGGGTCAATGGGATGTGTGCTGGGACAACATGACTCTACTGGAAAGAAAGAGCAAGCTGTCTATTATTTGAGCAAGAAGTTCACGAAT
TATGAATCAAAATACTCATTGTTGGAAAAAACATGTTGTGCTTTAGCATGGACGACTCAAAGATTAAGACAGTATATGTTATACTATACTACATGGCTTATTTCA
AAAATGGATCCTATAAAATACATTTTTTAA
Protein sequenceShow/hide protein sequence
MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGV
ASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGRPLIL
YLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF