CuGenDBv2

Gene ID	Cmc02g0050921
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr02:17342213..17343089
RNA-Seq Expression	Cmc02g0050921
Synteny	Cmc02g0050921
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

1.3e-153

98.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

1.7e-153

98.53

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0062141.1 pol protein [Cucumis melo var. makuwa]

6.6e-153

98.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGV VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE LYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0063715.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.0e-153

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVGPFEI+ERIGPVAYR+ALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

1.3e-153

98.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U7V9 Reverse transcriptase

8.4e-154

98.53

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7V8X5 Pol protein

3.2e-153

98.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGV VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE LYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7VCR4 Ty3-gypsy retrotransposon protein

2.4e-153

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVGPFEI+ERIGPVAYR+ALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7VJE2 Reverse transcriptase

6.4e-154

98.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

Q84KB0 Pol protein

6.4e-154

98.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.9e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT35 Transposon Tf2-2 polyprotein

1.9e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT36 Transposon Tf2-3 polyprotein

1.9e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT41 Transposon Tf2-12 polyprotein

1.9e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

Q9UR07 Transposon Tf2-11 polyprotein

1.9e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGATTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTA
TACTGCTAGTAAGTGGGCACAGTTGTACATGTTTGAGATAGTGAGATTACACGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGA
AGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGA
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCT
GTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGAT
CACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAAGTTGGGGATAAAGTGTTCTTAAAGGTAGCACCTATGAGA
GGTGTCTTGCGTTTTGAAAGGAGGGGAAAATTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATC
ACTCTCGACAGTCCATGATGTGTTTCACGTTTCCATGTTGAGGAAATTGATGAAAACTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMFEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLR
ACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMR
GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKLMKT

Cmc02g0050921 (gene) of Melon (Charmono) v1.1 genome