CuGenDBv2

Gene ID	Cmc02g0051081
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr02:17505743..17506171
RNA-Seq Expression	Cmc02g0051081
Synteny	Cmc02g0051081
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

GAU17915.1 hypothetical protein TSUD_330400, partial [Trifolium subterraneum]

2.4e-29

50.39

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Query:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL
        AF  F   V+NQFNK IK  Q D GG+ K +Q+  +  GI +  SC YTS QNGR ERKH+H+ E G TLLAQA + LNYWW+ F  AV LINR+P+P  
Subjt:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL

Query:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC
           SP  +L   + +++ LK FG A +PC
Subjt:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC

GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum]

2.0e-28

48.85

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Query:  VVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTP
        V AF  F    +NQFNK IK  Q D GG+ K +Q+L +  GI +  SC YTS QNGR ERKH+H+ E G TLLAQA + L+YWW+ F  AV LINR+P+ 
Subjt:  VVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTP

Query:  NLQGMSPIEMLFAHKQNFSELKVFGFAYFPC
          Q  SP  ++   + ++  LK FG A +PC
Subjt:  NLQGMSPIEMLFAHKQNFSELKVFGFAYFPC

KYP50444.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]

3.1e-29

50.76

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Query:  VVVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPT
        V  AF  F   V+NQFNK IK  Q D GG+ K + ++ +  GI    SC YTSAQNGR ERKH+HVVE G TLLAQA + L+YWW+ F  AV LINR+PT
Subjt:  VVVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPT

Query:  PNLQGMSPIEMLFAHKQNFSELKVFGFAYFPC
          ++  SP + LF    +++ +K FG A +PC
Subjt:  PNLQGMSPIEMLFAHKQNFSELKVFGFAYFPC

PNX78574.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense]

1.8e-29

51.16

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Query:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL
        AF  F   V+NQFNK IK  Q D GG+ K +Q++ L  GI +  SC YTS QNGR ERKH+HV E+G TLLAQAN+SL+YWW+ F  AV LINR+P+   
Subjt:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL

Query:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC
        +  SP  ++   + +++ LK FG A +PC
Subjt:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC

PNY02796.1 copia protein (gag-int-pol protein), partial [Trifolium pratense]

8.9e-29

50.39

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Query:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL
        AF  F T V+NQFNK IK  Q D GG+ K +Q+L L  GI +  SC YTS QNGR ERKH+HV E+G T+LAQA + L YWW+ F  +V LINR+P+   
Subjt:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL

Query:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC
        Q   P  +++  + ++S LK FG A +PC
Subjt:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC

TrEMBL top hits

e value

%identity

Alignment

A0A151S6M8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-29

50.76

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Query:  VVVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPT
        V  AF  F   V+NQFNK IK  Q D GG+ K + ++ +  GI    SC YTSAQNGR ERKH+HVVE G TLLAQA + L+YWW+ F  AV LINR+PT
Subjt:  VVVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPT

Query:  PNLQGMSPIEMLFAHKQNFSELKVFGFAYFPC
          ++  SP + LF    +++ +K FG A +PC
Subjt:  PNLQGMSPIEMLFAHKQNFSELKVFGFAYFPC

A0A2K3LJ49 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.7e-30

51.16

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Query:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL
        AF  F   V+NQFNK IK  Q D GG+ K +Q++ L  GI +  SC YTS QNGR ERKH+HV E+G TLLAQAN+SL+YWW+ F  AV LINR+P+   
Subjt:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL

Query:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC
        +  SP  ++   + +++ LK FG A +PC
Subjt:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC

A0A803PM38 Uncharacterized protein

2.5e-29

49.62

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Query:  VVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTP
        + AF  F   V+NQFN  +K+ Q+D GG+ +   R     GIG+   C +TS QNGR ERKH+H+VE+G TLLAQA++   YWWD F  AV LINR+PTP
Subjt:  VVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTP

Query:  NLQGMSPIEMLFAHKQNFSELKVFGFAYFPC
         L+  +P E+LF  + ++  LKVFG + FPC
Subjt:  NLQGMSPIEMLFAHKQNFSELKVFGFAYFPC

A0A803Q615 Uncharacterized protein

1.5e-29

50.39

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Query:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL
        AF HF T  +N  ++ IK  +SD GG+ +         GI +  SC +TSAQNGR ERKH+H+VE+G TLLAQA I   YWWD F  +V LINR+PTP L
Subjt:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL

Query:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC
        +G SP+E+LF  K ++  LK FG   +PC
Subjt:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC

A0A803QD60 Uncharacterized protein

4.6e-31

50.39

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Query:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL
        AF  F  + + Q  + IK+ ++D GG+ + +Q + +  GI +H SC +TSAQNGR +RKH+HVVE+G TLLAQA++ L YWW+ F  AV LINR+PTP L
Subjt:  AFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNL

Query:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC
        +  SP E L+  + +++ LKVFGFA FPC
Subjt:  QGMSPIEMLFAHKQNFSELKVFGFAYFPC

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.2e-21

44.09

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Query:  FITY---VKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNLQ
        FIT+   ++N+F   I  F SDNGG+   +       GI +  S  +T   NG  ERKH+H+VE G TLL+ A+I   YW   F +AV LINR+PTP LQ
Subjt:  FITY---VKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNLQ

Query:  GMSPIEMLFAHKQNFSELKVFGFAYFP
          SP + LF    N+ +L+VFG A +P
Subjt:  GMSPIEMLFAHKQNFSELKVFGFAYFP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.1e-21

43.55

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Query:  FITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNLQGMS
        F + V+N+F   I    SDNGG+   ++      GI +  S  +T   NG  ERKH+H+VE+G TLL+ A++   YW   F +AV LINR+PTP LQ  S
Subjt:  FITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNLQGMS

Query:  PIEMLFAHKQNFSELKVFGFAYFP
        P + LF    N+ +LKVFG A +P
Subjt:  PIEMLFAHKQNFSELKVFGFAYFP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTTTTAGGTGCAGTTGTTGTTGCCTTTAAGCACTTTATTACTTATGTCAAAAACCAATTCAATAAAACAATTAAAAAATTTCAATCTGACAATGGGGGAAAGAATAA
GAAAATACAACGGTTGTGTTTAACCATGGGAATCGGTTATCATTTCTCTTGCACATATACATCGGCACAGAATGGTAGGGTTGAAAGAAAACATAAGCATGTCGTAGAAA
TTGGATTCACTCTTTTAGCCCAAGCCAACATATCATTAAATTATTGGTGGGATATCTTCTTAATTGCTGTCATTCTCATTAATAGGATGCCAACTCCAAACTTACAAGGT
ATGTCTCCCATTGAAATGTTATTTGCTCACAAGCAAAATTTTTCTGAATTGAAGGTGTTCGGTTTTGCATATTTTCCATGCCAAGTCCATATCAATTAA

mRNA sequence

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Protein sequence

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MVLGAVVVAFKHFITYVKNQFNKTIKKFQSDNGGKNKKIQRLCLTMGIGYHFSCTYTSAQNGRVERKHKHVVEIGFTLLAQANISLNYWWDIFLIAVILINRMPTPNLQG
MSPIEMLFAHKQNFSELKVFGFAYFPCQVHIN

Cmc02g0051081 (gene) of Melon (Charmono) v1.1 genome