; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0051451 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0051451
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr02:17995311..17996021
RNA-Seq ExpressionCmc02g0051451
SyntenyCmc02g0051451
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-10784.75Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQY L IQIIRDRKNKTLALSQ TYI+K+LVRYSMQNSKK LLPF+H VHLSK+Q PK PQEVEDMRRIPYAS +G+L+YAML TRPDICY V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        I+SRYQSNP LDH   VKI+LKYLRRTRDYMLVYGAKDLIL GYTD DFQTDKDSRKSTSGSVFTLNGG V+W +IKQGCIADSTMEAE VAAC+AAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFL+DLEVVPNMNL I LYCDNSGAV NSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

KAA0043583.1 putative Integrase core domain [Cucumis melo var. makuwa]9.4e-10884.75Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQY L IQIIRDRKNKTLALSQ TYI+KMLVRYSMQNSKK LLPF+H VHLSK+QCPK PQEVEDMRRIPYASV+G+L+Y MLYTRPDICY V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        I+SRYQSNP LDH   VKIILKYLRRTRDYMLVY AKDLIL GYTD DFQTDKD RKSTSGSVFTLNGG ++W +IKQGCIADSTMEAE VA C+AAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFL+DLEVVPNMNL I LYCDNSGAV NSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

KAA0046516.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-130100Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-10784.75Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQY L IQIIRDRKNKTLALSQ TYI+K+LVRYSMQNSKK LLPF+H VHLSK+Q PK PQEVEDMRRIPYAS +G+L+YAML TRPDICY V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        I+SRYQSNP LDH   VKI+LKYLRRTRDYMLVYGAKDLIL GYTD DFQTDKDSRKSTSGSVFTLNGG V+W +IKQGCIADSTMEAE VAAC+AAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFL+DLEVVPNMNL I LYCDNSGAV NSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

TYK28745.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-130100Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

TrEMBL top hitse value%identityAlignment
A0A5A7TJH9 Putative Integrase core domain4.6e-10884.75Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQY L IQIIRDRKNKTLALSQ TYI+KMLVRYSMQNSKK LLPF+H VHLSK+QCPK PQEVEDMRRIPYASV+G+L+Y MLYTRPDICY V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        I+SRYQSNP LDH   VKIILKYLRRTRDYMLVY AKDLIL GYTD DFQTDKD RKSTSGSVFTLNGG ++W +IKQGCIADSTMEAE VA C+AAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFL+DLEVVPNMNL I LYCDNSGAV NSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

A0A5A7TX05 Gag/pol protein2.5e-130100Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

A0A5A7TZD0 Gag/pol protein1.0e-10784.75Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQY L IQIIRDRKNKTLALSQ TYI+K+LVRYSMQNSKK LLPF+H VHLSK+Q PK PQEVEDMRRIPYAS +G+L+YAML TRPDICY V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        I+SRYQSNP LDH   VKI+LKYLRRTRDYMLVYGAKDLIL GYTD DFQTDKDSRKSTSGSVFTLNGG V+W +IKQGCIADSTMEAE VAAC+AAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFL+DLEVVPNMNL I LYCDNSGAV NSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

A0A5A7UYE8 Gag/pol protein1.0e-10784.75Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQY L IQIIRDRKNKTLALSQ TYI+K+LVRYSMQNSKK LLPF+H VHLSK+Q PK PQEVEDMRRIPYAS +G+L+YAML TRPDICY V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        I+SRYQSNP LDH   VKI+LKYLRRTRDYMLVYGAKDLIL GYTD DFQTDKDSRKSTSGSVFTLNGG V+W +IKQGCIADSTMEAE VAAC+AAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFL+DLEVVPNMNL I LYCDNSGAV NSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

A0A5D3DZI2 Gag/pol protein2.5e-130100Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
        VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.7e-2330.42Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        M DL E ++ + I+I  + +   + LSQ  Y+ K+L +++M+N      P   +++       ++    ED    P  S++G L+Y ML TRPD+   V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYG---AKDLILIGYTDYDFQTDKDSRKSTSGSVFTL-NGGVVIWCNIKQGCIADSTMEAENVAACKA
        I+SRY S    +    +K +L+YL+ T D  L++    A +  +IGY D D+   +  RKST+G +F + +  ++ W   +Q  +A S+ EAE +A  +A
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYG---AKDLILIGYTDYDFQTDKDSRKSTSGSVFTL-NGGVVIWCNIKQGCIADSTMEAENVAACKA

Query:  AKEAVWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP
         +EA+WL+  L  + +   +   I +Y DN G ++ +  P
Subjt:  AKEAVWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSKEP

P0CV72 Secreted RxLR effector protein 1612.8e-2242.11Show/hide
Query:  MRRIPYASVMGNLIYAMLYTRPDICYTVRIISRYQSNPELDHRMTVKIILKYLRRTRDYMLVY-GAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGV
        M+ +PY S +G ++Y M+ TRPD+   V ++S++ S+P   H   +K +L+YL+ T+ Y L +  A    L+GY+D D+  D +SR+STSG +F LNGG 
Subjt:  MRRIPYASVMGNLIYAMLYTRPDICYTVRIISRYQSNPELDHRMTVKIILKYLRRTRDYMLVY-GAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGV

Query:  VIWCNIKQGCIADSTMEAENVAACKAAKEAVWL
        V W + KQ  +A S+ E E +A  +A +EAVWL
Subjt:  VIWCNIKQGCIADSTMEAENVAACKAAKEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.1e-5044.02Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        MKDLG AQ  L ++I+R+R ++ L LSQE YI ++L R++M+N+K    P    + LSKK CP   +E  +M ++PY+S +G+L+YAM+ TRPDI + V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA
        ++SR+  NP  +H   VK IL+YLR T    L +G  D IL GYTD D   D D+RKS++G +FT +GG + W +  Q C+A ST EAE +AA +  KE 
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEA

Query:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSK
        +WL++FL +L +        ++YCD+  A+  SK
Subjt:  VWLRKFLNDLEVVPNMNLSIILYCDNSGAVTNSK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.5e-1830.87Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        +KD  E  Y L I+    R    L LSQ  YI  +L R +M  +K    P      LS     K+    E      Y  ++G+L Y + +TRPDI Y V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDY-MLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKE
         +S++   P  +H   +K IL+YL  T ++ + +     L L  Y+D D+  DKD   ST+G +  L    + W + KQ  +  S+ EAE  +    + E
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDY-MLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKE

Query:  AVWLRKFLNDLEVVPNMNLSIILYCDNSGA
          W+   L +L +   +    ++YCDN GA
Subjt:  AVWLRKFLNDLEVVPNMNLSIILYCDNSGA

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.2e-1729.57Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        +K+  +  Y L I+    R  + L LSQ  Y   +L R +M  +K    P      L+     K+P   E      Y  ++G+L Y + +TRPD+ Y V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDY-MLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKE
         +S+Y   P  DH   +K +L+YL  T D+ + +     L L  Y+D D+  D D   ST+G +  L    + W + KQ  +  S+ EAE  +    + E
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDY-MLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKE

Query:  AVWLRKFLNDLEVVPNMNLSIILYCDNSGA
          W+   L +L +   ++   ++YCDN GA
Subjt:  AVWLRKFLNDLEVVPNMNLSIILYCDNSGA

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.7e-1828.14Show/hide
Query:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR
        ++DLG  +Y L ++I R      + + Q  Y   +L    +   K   +P    V  S         +  D +   Y  ++G L+Y  + TR DI + V 
Subjt:  MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVR

Query:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAK-DLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKE
         +S++   P L H+  V  IL Y++ T    L Y ++ ++ L  ++D  FQ+ KD+R+ST+G    L   ++ W + KQ  ++ S+ EAE  A   A  E
Subjt:  IISRYQSNPELDHRMTVKIILKYLRRTRDYMLVYGAK-DLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKE

Query:  AVWLRKFLNDLEVVPNMNLSIILYCDNSGAV
         +WL +F  +L++   ++   +L+CDN+ A+
Subjt:  AVWLRKFLNDLEVVPNMNLSIILYCDNSGAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGATTTGGGAGAGGCACAATATACTCTTAGGATCCAAATCATAAGGGATCGTAAGAACAAAACGCTAGCATTGTCTCAGGAAACCTATATTAACAAAATGTTGGT
TAGATATTCGATGCAAAACTCTAAGAAGGATTTATTACCTTTCAAGCATGAGGTTCACTTGTCTAAGAAACAGTGTCCTAAGATACCTCAAGAAGTTGAGGATATGAGAC
GTATTCCCTATGCTTCGGTTATGGGCAACTTAATATATGCTATGCTCTACACTAGGCCAGACATTTGTTATACAGTGAGAATAATCAGTAGGTATCAGTCCAACCCAGAG
TTAGACCACAGGATGACGGTTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTATAGGATATACTGATTA
TGATTTCCAAACTGATAAGGATTCTAGGAAATCCACGTCAGGATCAGTGTTCACCCTAAACGGAGGAGTTGTGATATGGTGTAATATCAAGCAAGGATGCATTGCAGACT
CTACTATGGAAGCTGAAAACGTTGCTGCTTGTAAAGCAGCAAAAGAAGCAGTTTGGCTCAGGAAGTTCCTCAATGATTTGGAAGTTGTTCCAAACATGAACTTGTCCATC
ATTCTATATTGTGATAACAGTGGGGCAGTAACCAATTCTAAAGAACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGATTTGGGAGAGGCACAATATACTCTTAGGATCCAAATCATAAGGGATCGTAAGAACAAAACGCTAGCATTGTCTCAGGAAACCTATATTAACAAAATGTTGGT
TAGATATTCGATGCAAAACTCTAAGAAGGATTTATTACCTTTCAAGCATGAGGTTCACTTGTCTAAGAAACAGTGTCCTAAGATACCTCAAGAAGTTGAGGATATGAGAC
GTATTCCCTATGCTTCGGTTATGGGCAACTTAATATATGCTATGCTCTACACTAGGCCAGACATTTGTTATACAGTGAGAATAATCAGTAGGTATCAGTCCAACCCAGAG
TTAGACCACAGGATGACGGTTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTATAGGATATACTGATTA
TGATTTCCAAACTGATAAGGATTCTAGGAAATCCACGTCAGGATCAGTGTTCACCCTAAACGGAGGAGTTGTGATATGGTGTAATATCAAGCAAGGATGCATTGCAGACT
CTACTATGGAAGCTGAAAACGTTGCTGCTTGTAAAGCAGCAAAAGAAGCAGTTTGGCTCAGGAAGTTCCTCAATGATTTGGAAGTTGTTCCAAACATGAACTTGTCCATC
ATTCTATATTGTGATAACAGTGGGGCAGTAACCAATTCTAAAGAACCTTGA
Protein sequenceShow/hide protein sequence
MKDLGEAQYTLRIQIIRDRKNKTLALSQETYINKMLVRYSMQNSKKDLLPFKHEVHLSKKQCPKIPQEVEDMRRIPYASVMGNLIYAMLYTRPDICYTVRIISRYQSNPE
LDHRMTVKIILKYLRRTRDYMLVYGAKDLILIGYTDYDFQTDKDSRKSTSGSVFTLNGGVVIWCNIKQGCIADSTMEAENVAACKAAKEAVWLRKFLNDLEVVPNMNLSI
ILYCDNSGAVTNSKEP