CuGenDBv2

Gene ID	Cmc02g0051881
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3-gypsy retrotransposon protein
Genome location	CMiso1.1chr02:18833364..18833579
RNA-Seq Expression	Cmc02g0051881
Synteny	Cmc02g0051881
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033475.1 pol protein [Cucumis melo var. makuwa]

1.3e-25

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

KAA0048692.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.3e-25

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

KAA0052348.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.3e-25

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

KAA0067428.1 pol protein [Cucumis melo var. makuwa]

1.3e-25

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

TYK01903.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.3e-25

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD4 Reverse transcriptase

6.5e-26

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

A0A5A7TYQ4 Gag protease polyprotein

6.5e-26

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

A0A5A7UAV9 Reverse transcriptase

6.5e-26

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

A0A5A7VI69 Reverse transcriptase

6.5e-26

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

A0A5D3BQD5 Reverse transcriptase

6.5e-26

93.65

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS
        MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGYHQLRIKD +VPKIAFRS
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRS

SwissProt top hits

e value

%identity

Alignment

P0CT41 Transposon Tf2-12 polyprotein

2.6e-11

43.55

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFR
        +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K++L+S YH +R++  +  K+AFR
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFR

P31843 RNA-directed DNA polymerase homolog

1.6e-16

63.79

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPK
        +R+CIDYR L KVT+KNKYP+PR+DDLFD+L  AT F+K++LRSGY Q+RI   + PK
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.0e-11

46.67

Show/hide

Query:  RLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAF
        RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ ++L SGYHQ+ ++  +  K AF
Subjt:  RLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAF

Q99315 Transposon Ty3-G Gag-Pol polyprotein

2.0e-11

46.67

Show/hide

Query:  RLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAF
        RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ ++L SGYHQ+ ++  +  K AF
Subjt:  RLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAF

Q9UR07 Transposon Tf2-11 polyprotein

2.6e-11

43.55

Show/hide

Query:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFR
        +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K++L+S YH +R++  +  K+AFR
Subjt:  MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFR

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGCTTATGTATTGACTACAGAGAGTTGAATAAGGTAACTGTTAAGAACAAATATCCCTTGCCCAGGATCGATGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTT
CTCTAAGATCAACCTTCGATCAGGGTATCATCAATTGAGGATTAAGGATAGTAATGTACCGAAGATAGCCTTTCGTTCAGATATGCACACTATGAGTTTATTGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIKDSNVPKIAFRSDMHTMSLL

Cmc02g0051881 (gene) of Melon (Charmono) v1.1 genome