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Cmc02g0052101 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0052101
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr02:19195495..19195866
RNA-Seq ExpressionCmc02g0052101
SyntenyCmc02g0052101
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052097.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-5591.87Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAY VHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

KAA0054647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.4e-5692.68Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAYAVHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

KAA0058546.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.7e-5692.68Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS ITDSNTTS PLDPNVHLTPYDGVPL+DVSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAYAVHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

KAA0060225.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.8e-5591.87Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRS+GYLLSQAKY SDLL RS ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAYAVHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

KAA0064060.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-5591.87Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS ITDSNT S PLDPNVHLTPYDGVPLE+VSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAYAVHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

TrEMBL top hitse value%identityAlignment
A0A5A7UCC7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-5591.87Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAY VHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

A0A5A7UJ79 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-5692.68Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAYAVHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

A0A5A7UWJ4 Putative mitochondrial protein2.8e-5692.68Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS ITDSNTTS PLDPNVHLTPYDGVPL+DVSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAYAVHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

A0A5A7V2X4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-5591.87Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRS+GYLLSQAKY SDLL RS ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAYAVHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

A0A5A7V9Z8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-5591.87Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS ITDSNT S PLDPNVHLTPYDGVPLE+VSLYRQLVGSLI
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDIAYAVHIVSQ MAAP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-0935.34Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEV--SRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHL-------TPYDGVPLEDVSL
        M+I G D   I  L+  L + F+MKDLG     LG+++   R S    LSQ KY+  +L R  + ++   S PL  ++ L       T  +   +  V  
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEV--SRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHL-------TPYDGVPLEDVSL

Query:  YRQLVGSLIY-LTMTRPDIAYAVHIVSQIMAAP
        Y   VGSL+Y +  TRPDIA+AV +VS+ +  P
Subjt:  YRQLVGSLIY-LTMTRPDIAYAVHIVSQIMAAP

P25600 Putative transposon Ty5-1 protein YCL074W2.7e-0829.6Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYL-LSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSL
        +++    P+    ++  L + + MKDLG ++ FLGL + + S+G + LS   Y++     S I     T  PL  +  L       L+D++ Y+ +VG L
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYL-LSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSL

Query:  IYLTMT-RPDIAYAVHIVSQIMAAP
        ++   T RPDI+Y V ++S+ +  P
Subjt:  IYLTMT-RPDIAYAVHIVSQIMAAP

P92519 Uncharacterized mitochondrial protein AtMg008101.9e-1437.4Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        +++ G+    +  L   L   F MKDLG ++YFLG+++     G  LSQ KY   +L  + + D    S PL   ++ +        D S +R +VG+L 
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDI+YAV+IV Q M  P
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-2043.09Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        ++I GNDP  + +    L Q F +KD   L+YFLG+E  R   G  LSQ +Y+ DLL R+ +  +   + P+ P+  L+ Y G  L D + YR +VGSL 
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YL  TRPDI+YAV+ +SQ M  P
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.1e-1739.84Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        ++I GND   +      L Q F +K+   L+YFLG+E  R   G  LSQ +Y  DLL R+ +  +   + P+  +  LT + G  L D + YR +VGSL 
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YL  TRPD++YAV+ +SQ M  P
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.1e-2039.84Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        +II  N+  A+ +L+  L   F+++DLG L YFLGLE++R + G  + Q KY  DLL  + +     +S+P+DP+V  + + G    D   YR+L+G L+
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YL +TR DI++AV+ +SQ   AP
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP

ATMG00810.1 DNA/RNA polymerases superfamily protein1.4e-1537.4Show/hide
Query:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI
        +++ G+    +  L   L   F MKDLG ++YFLG+++     G  LSQ KY   +L  + + D    S PL   ++ +        D S +R +VG+L 
Subjt:  MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLI

Query:  YLTMTRPDIAYAVHIVSQIMAAP
        YLT+TRPDI+YAV+IV Q M  P
Subjt:  YLTMTRPDIAYAVHIVSQIMAAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATCTTTGGTAATGATCCACAGGCCATATTCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGGTCTCTTAACTACTTTCTTGGCCTTGA
AGTCTCTCGACGCTCAGACGGGTATTTATTGTCTCAAGCTAAATATGTCTCTGATCTTTTAGTTCGTTCAAGAATCACTGACTCTAACACAACTTCAATGCCGTTAGATC
CCAATGTTCATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGGCAACTTGTTGGCAGTCTCATCTATCTAACAATGACCCGCCCAGACATTGCA
TATGCTGTTCATATTGTTAGTCAAATTATGGCTGCTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTATCTTTGGTAATGATCCACAGGCCATATTCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGGTCTCTTAACTACTTTCTTGGCCTTGA
AGTCTCTCGACGCTCAGACGGGTATTTATTGTCTCAAGCTAAATATGTCTCTGATCTTTTAGTTCGTTCAAGAATCACTGACTCTAACACAACTTCAATGCCGTTAGATC
CCAATGTTCATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGGCAACTTGTTGGCAGTCTCATCTATCTAACAATGACCCGCCCAGACATTGCA
TATGCTGTTCATATTGTTAGTCAAATTATGGCTGCTCCTTGA
Protein sequenceShow/hide protein sequence
MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIA
YAVHIVSQIMAAP