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Cmc02g0052221 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0052221
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr02:19488479..19488892
RNA-Seq ExpressionCmc02g0052221
SyntenyCmc02g0052221
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-4582.61Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFT VL IL YIKG LGHGLQFSS+SSLVL GFSDADW GDP DRRSTTGY FYLGDALISW SKKQSVVSR ST+S+Y ALA+ATS+L+WLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTM
        WLLTDM APQ SPT+
Subjt:  WLLTDMEAPQASPTM

KAA0044752.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.3e-4582.61Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFT VL IL YIKG LGHGLQFSS+SSLVL GFSDADW GDP DRRSTTGY FYLGDALISW SKKQSVVSR ST+S+Y ALA+ATS+L+WLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTM
        WLLTDM APQ SPT+
Subjt:  WLLTDMEAPQASPTM

KAA0062656.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.7e-75100Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW
        WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW
Subjt:  WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-4582.61Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFT VL IL YIKG LGHGLQFSS+SSLVL GFSDADW GDP DRRSTTGY FYLGDALISW SKKQSVVSR ST+S+Y ALA+ATS+L+WLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTM
        WLLTDM APQ SPT+
Subjt:  WLLTDMEAPQASPTM

TYK01190.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.3e-7499.27Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRS LVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW
        WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW
Subjt:  WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW

TrEMBL top hitse value%identityAlignment
A0A5A7V894 Putative mitochondrial protein2.3e-75100Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW
        WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW
Subjt:  WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW

A0A5A7VDV6 Putative mitochondrial protein6.4e-4682.61Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFT VL IL YIKG LGHGLQFSS+SSLVL GFSDADW GDP DRRSTTGY FYLGDALISW SKKQSVVSR ST+S+Y ALA+ATS+L+WLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTM
        WLLTDM APQ SPT+
Subjt:  WLLTDMEAPQASPTM

A0A5D3BQ58 Putative mitochondrial protein1.1e-7499.27Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRS LVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW
        WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW
Subjt:  WLLTDMEAPQASPTMELPSSNLQVYGFLWSGYWCQPW

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-946.4e-4682.61Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFT VL IL YIKG LGHGLQFSS+SSLVL GFSDADW GDP DRRSTTGY FYLGDALISW SKKQSVVSR ST+S+Y ALA+ATS+L+WLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTM
        WLLTDM APQ SPT+
Subjt:  WLLTDMEAPQASPTM

A0A5D3DWU7 Retrovirus-related Pol polyprotein from transposon TNT 1-946.4e-4682.61Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        MAAPRTIHFT VL IL YIKG LGHGLQFSS+SSLVL GFSDADW GDP DRRSTTGY FYLGDALISW SKKQSVVSR ST+S+Y ALA+ATS+L+WLR
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASPTM
        WLLTDM APQ SPT+
Subjt:  WLLTDMEAPQASPTM

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.1e-1339.22Show/hide
Query:  ILHYIKGNLGHGLQFSSRSSL--VLFGFSDADWTGDPIDRRSTTGYYFYLGD-ALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLRWLLTDMEAPQA
        +L Y+KG +   L F    +    + G+ D+DW G  IDR+STTGY F + D  LI W +K+Q+ V+  ST+++Y AL  A  + LWL++LLT +     
Subjt:  ILHYIKGNLGHGLQFSSRSSL--VLFGFSDADWTGDPIDRRSTTGYYFYLGD-ALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLRWLLTDMEAPQA

Query:  SP
        +P
Subjt:  SP

P0CV72 Secreted RxLR effector protein 1615.1e-1641.67Show/hide
Query:  PRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWL
        P   H+  +  +L Y++    +GL+F+   +  L G+SDADW GD   RRST+GY F L    +SW SKKQ  V+  ST+ +Y AL+ AT + +WL
Subjt:  PRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWL

P92519 Uncharacterized mitochondrial protein AtMg008101.9e-1541.84Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLW
        M  P    F ++  +L Y+KG + HGL     S L +  F D+DW G    RRSTTG+  +LG  +ISW +K+Q  VSR ST+++Y ALA   ++L W
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.0e-1742.45Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        M  P   H   +  IL Y+ G   HG+     ++L L  +SDADW GD  D  ST GY  YLG   ISW SKKQ  V R ST+++Y ++AN +S++ W+ 
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDM
         LLT++
Subjt:  WLLTDM

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.7e-1740.71Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR
        M  P   H+  +  +L Y+ G   HG+     ++L L  +SDADW GD  D  ST GY  YLG   ISW SKKQ  V R ST+++Y ++AN +S+L W+ 
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLR

Query:  WLLTDMEAPQASP
         LLT++    + P
Subjt:  WLLTDMEAPQASP

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.4e-2346.02Show/hide
Query:  APRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLRWL
        APR  H   V+ ILHYIKG +G GL +SS++ + L  FSDA +      RRST GY  +LG +LISW SKKQ VVS+ S +++Y AL+ AT +++WL   
Subjt:  APRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLRWL

Query:  LTDMEAPQASPTM
          +++ P + PT+
Subjt:  LTDMEAPQASPTM

ATMG00240.1 Gag-Pol-related retrotransposon family protein6.2e-0945.61Show/hide
Query:  AAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGY
        +A RT     V  +LHY+KG +G GL +S+ S L L  F+D+DW   P  RRS TG+
Subjt:  AAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGY

ATMG00810.1 DNA/RNA polymerases superfamily protein1.4e-1641.84Show/hide
Query:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLW
        M  P    F ++  +L Y+KG + HGL     S L +  F D+DW G    RRSTTG+  +LG  +ISW +K+Q  VSR ST+++Y ALA   ++L W
Subjt:  MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTCCTCGTACTATTCACTTCACTGTCGTTCTTTATATTCTTCACTATATTAAAGGCAATTTGGGTCATGGTCTACAGTTCTCCTCCCGGTCCTCCCTAGTTCT
CTTTGGATTCTCTGATGCTGATTGGACGGGTGATCCTATTGATAGAAGGTCTACCACTGGTTATTATTTCTATTTAGGTGATGCTCTTATCTCCTGGTATAGCAAGAAAC
AATCTGTTGTTTCCCGTTTCAGTACAAAGTCTAAATATCATGCTCTAGCTAATGCCACTTCGAAATTACTATGGCTTCGTTGGCTTCTTACTGATATGGAAGCCCCACAG
GCATCACCCACGATGGAGTTACCATCTTCAAATCTTCAGGTCTATGGGTTTCTTTGGTCAGGATATTGGTGTCAACCATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTCCTCGTACTATTCACTTCACTGTCGTTCTTTATATTCTTCACTATATTAAAGGCAATTTGGGTCATGGTCTACAGTTCTCCTCCCGGTCCTCCCTAGTTCT
CTTTGGATTCTCTGATGCTGATTGGACGGGTGATCCTATTGATAGAAGGTCTACCACTGGTTATTATTTCTATTTAGGTGATGCTCTTATCTCCTGGTATAGCAAGAAAC
AATCTGTTGTTTCCCGTTTCAGTACAAAGTCTAAATATCATGCTCTAGCTAATGCCACTTCGAAATTACTATGGCTTCGTTGGCTTCTTACTGATATGGAAGCCCCACAG
GCATCACCCACGATGGAGTTACCATCTTCAAATCTTCAGGTCTATGGGTTTCTTTGGTCAGGATATTGGTGTCAACCATGGTAG
Protein sequenceShow/hide protein sequence
MAAPRTIHFTVVLYILHYIKGNLGHGLQFSSRSSLVLFGFSDADWTGDPIDRRSTTGYYFYLGDALISWYSKKQSVVSRFSTKSKYHALANATSKLLWLRWLLTDMEAPQ
ASPTMELPSSNLQVYGFLWSGYWCQPW