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Cmc02g0052251 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0052251
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr02:19498407..19498721
RNA-Seq ExpressionCmc02g0052251
SyntenyCmc02g0052251
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032600.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.9e-4590.48Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE
        M SPEAPYWKEAVNSEIESI+HN TWELVDLPLGS PL CK+ FKRKMKTD SIDKYKARLVAKGYKQQE LDYFDTYSPVTRITSIRMLIAIS LHGFE
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE

Query:  IHQMD
        IHQMD
Subjt:  IHQMD

KAA0049877.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]5.5e-4487.62Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE
        M SP+APYWKEAVNSEIESIMHNHTW+ VDLPLGSK L CK+ FKRKMKTD S+DKYKARLVAKGYKQQE LDYFDTYSPVTRITSI MLIAISALHGFE
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE

Query:  IHQMD
        IHQM+
Subjt:  IHQMD

KAA0058473.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]3.8e-4589.52Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE
        M SPEAPYWKE VNSEIESIMHNHTWELVDLPLGSKPL CK+ FKRKMKTD SIDKYKARLV KGYKQQE LDYFDTYSPV+RITSIRM IAIS LHGFE
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE

Query:  IHQMD
        IHQMD
Subjt:  IHQMD

KAA0062658.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.5e-53100Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKFFKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEI
        MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKFFKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEI
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKFFKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEI

Query:  HQMD
        HQMD
Subjt:  HQMD

WP_202958841.1 hypothetical protein, partial [Solirubrobacter sp. CPCC 204708]4.4e-4180.95Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE
        M +PEAP+WKEA+NSEIESIMHNHTWELV+LP GSKPL CK+ FKRKMK D SIDKYKARLVAKG+KQ+E  DYFDTYSPVTRITS+RMLIAI+A+H  E
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE

Query:  IHQMD
        IHQMD
Subjt:  IHQMD

TrEMBL top hitse value%identityAlignment
A0A2Z7APY0 Uncharacterized protein3.4e-3979.61Show/hide
Query:  SPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIH
        SP+AP WKEAVNSEIESIMHNHTWELVDLP G+KPL CK+  KRK K D +IDKYKARLVAKG++Q+E +DYFDTYSPVTRITSIRM IAI+ALH  EIH
Subjt:  SPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIH

Query:  QMD
        QMD
Subjt:  QMD

A0A5A7SP25 Putative mitochondrial protein1.4e-4590.48Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE
        M SPEAPYWKEAVNSEIESI+HN TWELVDLPLGS PL CK+ FKRKMKTD SIDKYKARLVAKGYKQQE LDYFDTYSPVTRITSIRMLIAIS LHGFE
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE

Query:  IHQMD
        IHQMD
Subjt:  IHQMD

A0A5A7U6A4 Retrotransposon protein, putative, Ty1-copia sub-class2.7e-4487.62Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE
        M SP+APYWKEAVNSEIESIMHNHTW+ VDLPLGSK L CK+ FKRKMKTD S+DKYKARLVAKGYKQQE LDYFDTYSPVTRITSI MLIAISALHGFE
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE

Query:  IHQMD
        IHQM+
Subjt:  IHQMD

A0A5A7V4X9 Putative mitochondrial protein4.1e-53100Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKFFKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEI
        MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKFFKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEI
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKFFKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEI

Query:  HQMD
        HQMD
Subjt:  HQMD

A0A5D3C7R1 Retrotransposon protein, putative, Ty1-copia subclass1.9e-4589.52Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE
        M SPEAPYWKE VNSEIESIMHNHTWELVDLPLGSKPL CK+ FKRKMKTD SIDKYKARLV KGYKQQE LDYFDTYSPV+RITSIRM IAIS LHGFE
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFE

Query:  IHQMD
        IHQMD
Subjt:  IHQMD

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.0e-1234.02Show/hide
Query:  WKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD
        W+EA+N+E+ +   N+TW +   P     +  ++ F  K     +  +YKARLVA+G+ Q+ ++DY +T++PV RI+S R ++++   +  ++HQMD
Subjt:  WKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-1741.18Show/hide
Query:  PEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQ
        PE     +A+  E+ES+  N T++LV+LP G +PL CK+ FK K   D  + +YKARLV KG++Q++ +D+ + +SPV ++TSIR +++++A    E+ Q
Subjt:  PEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQ

Query:  MD
        +D
Subjt:  MD

P92520 Uncharacterized mitochondrial protein AtMg008209.5e-1539.36Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAIS
        +F+ + P W +A+  E++++  N TW LV  P+    L CK+ FK K+ +D ++D+ KARLVAKG+ Q+E + + +TYSPV R  +IR ++ ++
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAIS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.7e-1642.86Show/hide
Query:  WKEAVNSEIESIMHNHTWELVDLPLGSKPL-SCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD
        W+ A+ SEI + + NHTW+LV  P     +  C++ F +K  +D S+++YKARLVAKGY Q+  LDY +T+SPV + TSIR+++ ++    + I Q+D
Subjt:  WKEAVNSEIESIMHNHTWELVDLPLGSKPL-SCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.5e-1743.88Show/hide
Query:  WKEAVNSEIESIMHNHTWELVDLPLGSKPL-SCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD
        W++A+ SEI + + NHTW+LV  P  S  +  C++ F +K  +D S+++YKARLVAKGY Q+  LDY +T+SPV + TSIR+++ ++    + I Q+D
Subjt:  WKEAVNSEIESIMHNHTWELVDLPLGSKPL-SCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 88.8e-2447.42Show/hide
Query:  WKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD
        W  A++ EI ++   HTWE+  LP   KP+ CK+ +K K  +D +I++YKARLVAKGY QQE +D+ +T+SPV ++TS+++++AISA++ F +HQ+D
Subjt:  WKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)6.8e-1639.36Show/hide
Query:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAIS
        +F+ + P W +A+  E++++  N TW LV  P+    L CK+ FK K+ +D ++D+ KARLVAKG+ Q+E + + +TYSPV R  +IR ++ ++
Subjt:  MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKF-FKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTCCTGAAGCTCCATATTGGAAAGAGGCTGTGAATAGTGAAATTGAGTCCATTATGCATAACCATACTTGGGAGCTAGTTGATCTTCCATTAGGAAGTAAACC
ACTTAGTTGTAAATTTTTCAAACGAAAGATGAAGACCGATGAGTCAATAGATAAATATAAGGCAAGACTTGTTGCCAAAGGTTATAAGCAACAAGAAGAACTTGACTATT
TTGATACATACTCACCAGTTACTAGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGATTTGAGATACATCAGATGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTCCTGAAGCTCCATATTGGAAAGAGGCTGTGAATAGTGAAATTGAGTCCATTATGCATAACCATACTTGGGAGCTAGTTGATCTTCCATTAGGAAGTAAACC
ACTTAGTTGTAAATTTTTCAAACGAAAGATGAAGACCGATGAGTCAATAGATAAATATAAGGCAAGACTTGTTGCCAAAGGTTATAAGCAACAAGAAGAACTTGACTATT
TTGATACATACTCACCAGTTACTAGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGATTTGAGATACATCAGATGGATTAA
Protein sequenceShow/hide protein sequence
MFSPEAPYWKEAVNSEIESIMHNHTWELVDLPLGSKPLSCKFFKRKMKTDESIDKYKARLVAKGYKQQEELDYFDTYSPVTRITSIRMLIAISALHGFEIHQMD