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Cmc02g0052261 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0052261
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr02:19499461..19499964
RNA-Seq ExpressionCmc02g0052261
SyntenyCmc02g0052261
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN66576.1 hypothetical protein VITISV_016964 [Vitis vinifera]1.5e-7075.3Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        FKLVFVSDKFVL+KNEM++GKGYLSDGLFK+NV+T+VPKSINNNK+ + AY++KS  +WHGRLGHVN+++L RLI+++ +PKF  D +H+CE CVESK+T
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        K PFHS +R T+PL+L HSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA+E+FK YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

KZV31144.1 hypothetical protein F511_24590 [Dorcoceras hygrometricum]2.0e-5965.06Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        F+LVF S+KF+LSKN ++IGKGYL D LFK+NV+ ++ +  + NK+    YIV+ + +WHGRLGHVN+N+L+RL+ +NL+P    + +H+CEVCVE+KMT
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        K PFHS +R T PLELIHSDICDLKFVQTRGGKKYF+TFIDDCTRYCYVYLL+ KDEA+E F+ YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

KZV36299.1 hypothetical protein F511_22414 [Dorcoceras hygrometricum]2.0e-5965.06Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        F+LVF S+KF+LSKN ++IGKGYL D LFK+NV+ ++ +  + NK+    YIV+ + +WHGRLGHVN+N+L+RL+ +NL+P    + +H+CEVCVE+KMT
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        K PFHS +R T PLELIHSDICDLKFVQTRGGKKYF+TFIDDCTRYCYVYLL+ KDEA+E F+ YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

KZV48065.1 hypothetical protein F511_31040 [Dorcoceras hygrometricum]2.0e-5965.06Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        F+LVF S+KF+LSKN ++IGKGYL D LFK+NV+ ++ +  + NK+    YIV+ + +WHGRLGHVN+N+L+RL+ +NL+P    + +H+CEVCVE+KMT
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        K PFHS +R T PLELIHSDICDLKFVQTRGGKKYF+TFIDDCTRYCYVYLL+ KDEA+E F+ YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

RVW26252.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.2e-7175.3Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        FKLVFVSDKFVL+KNEM++GKGYLSDGLFK+NV+T+VPKSINNNK+ + AY+++S  +WHGRLGHVN+++LRRLI+++ +PKF  DT+H+CE CVESK+T
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        K PFHS +R T+PL+LIH+DICDLKFVQTRGGKKYFITFIDDCTRYCYVYLL+SKDEA+E+FK YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

TrEMBL top hitse value%identityAlignment
A0A2N9F2Q4 Integrase catalytic domain-containing protein3.5e-6269.28Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        F+LVF SDKF+L+K+ M +GKGYLSDGLFK+NV+TIVP  IN NK  + AY+++S  VWHGRLGHVNF +L RL+N+NL+PKF  DT+H+CE CVE+K+T
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        +  FHS +R + PLELIHSD+CDLKFVQTRGG+KYF+TFIDDCTRYCYVYLL+SKDEA+E F  YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

A0A2N9F9L9 Integrase catalytic domain-containing protein4.1e-6369.88Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        F+LVF SDKF+L+K+ M +GKGYLSDGLFK+NV+TIVP  IN NK  + AY+++S  VWHGRLGHVNF +L RL+N+NL+PKF  DT+H+CE CVE+K+T
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        + PFHS +R + PLELIHSD+CDLKFVQTRGG+KYF+TFIDDCTRYCYVYLL+SKDEA+E F  YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

A0A2N9IGG8 Integrase catalytic domain-containing protein3.5e-6269.28Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        F+LVF SDKF+L+K+ M +GKGYLSDGLFK+NV+TIVP  IN NK  + AY+++S  VWHGRLGHVNF +L RL+N+NL+PKF  DT+H+CE CVE+K+T
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        +  FHS +R + PLELIHSD+CDLKFVQTRGG+KYF+TFIDDCTRYCYVYLL+SKDEA+E F  YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

A0A438CSS8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-7175.3Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        FKLVFVSDKFVL+KNEM++GKGYLSDGLFK+NV+T+VPKSINNNK+ + AY+++S  +WHGRLGHVN+++LRRLI+++ +PKF  DT+H+CE CVESK+T
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        K PFHS +R T+PL+LIH+DICDLKFVQTRGGKKYFITFIDDCTRYCYVYLL+SKDEA+E+FK YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

A5CBN2 Uncharacterized protein7.0e-7175.3Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT
        FKLVFVSDKFVL+KNEM++GKGYLSDGLFK+NV+T+VPKSINNNK+ + AY++KS  +WHGRLGHVN+++L RLI+++ +PKF  D +H+CE CVESK+T
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSF-VWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMT

Query:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK
        K PFHS +R T+PL+L HSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA+E+FK YK
Subjt:  KAPFHSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.9e-1228.93Show/hide
Query:  LSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSFVWHGRLGHVNFNSLRRLINMNLIPKFTFDTS-----HRCEVCVESKMTKAPFHST
        +SKN + + K   S  L  + V+     SIN    + F       +WH R GH++   L  +   N+    +   +       CE C+  K  + PF   
Subjt:  LSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSFVWHGRLGHVNFNSLRRLINMNLIPKFTFDTS-----HRCEVCVESKMTKAPFHST

Query:  KRMT---KPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFK
        K  T   +PL ++HSD+C      T   K YF+ F+D  T YC  YL+K K +   +F+
Subjt:  KRMT---KPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.9e-1930.91Show/hide
Query:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSFVWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMTK
        ++  F + K+ L+K  + I KG     L++ N        I   +L+     +   +WH R+GH++   L+ L   +LI      T   C+ C+  K  +
Subjt:  FKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSFVWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMTK

Query:  APFH-STKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLY
          F  S++R    L+L++SD+C    +++ GG KYF+TFIDD +R  +VY+LK+KD+  +VF+ +
Subjt:  APFH-STKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLY

Q12491 Transposon Ty2-B Gag-Pol polyprotein3.8e-0526.36Show/hide
Query:  HGRLGHVNFNSLRRLINMNLIP-------KFTFDTSHRCEVCVESKMTKAPFHSTKRMT-----KPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYC
        H  LGH NF S+++ +  N +        +++  ++++C  C+  K TK       R+      +P + +H+DI        +    YFI+F D+ TR+ 
Subjt:  HGRLGHVNFNSLRRLINMNLIP-------KFTFDTSHRCEVCVESKMTKAPFHSTKRMT-----KPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYC

Query:  YVYLLKSKDE
        +VY L  + E
Subjt:  YVYLLKSKDE

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.7e-1033.93Show/hide
Query:  WHGRLGHVNFNSLRRLINMNLIPKFTFDTSHR---CEVCVESKMTKAPF-HSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS
        WH RLGH   + L  +I+   +     + SH+   C  C+ +K  K PF  ST   T+PLE I+SD+     + +    +Y++ F+D  TRY ++Y LK 
Subjt:  WHGRLGHVNFNSLRRLINMNLIPKFTFDTSHR---CEVCVESKMTKAPF-HSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS

Query:  KDEAVEVFKLYK
        K +  E F  +K
Subjt:  KDEAVEVFKLYK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.3e-1033.93Show/hide
Query:  WHGRLGHVNFNSLRRLINMNLIPKFTFDTSHR---CEVCVESKMTKAPF-HSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS
        WH RLGH +   L  +I+ + +P    + SH+   C  C  +K  K PF +ST   +KPLE I+SD+     +      +Y++ F+D  TRY ++Y LK 
Subjt:  WHGRLGHVNFNSLRRLINMNLIPKFTFDTSHR---CEVCVESKMTKAPF-HSTKRMTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS

Query:  KDEAVEVFKLYK
        K +  + F ++K
Subjt:  KDEAVEVFKLYK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTAAGTTGGTATTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATGTACATTGGAAAAGGTTATCTGAGTGATGGTCTGTTTAAATTAAATGTACTCAC
AATTGTACCCAAAAGTATTAATAATAATAAACTATCTACTTTTGCTTATATTGTTAAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTCTTTGCGTA
GGCTGATTAATATGAACTTGATTCCAAAATTCACCTTTGATACAAGTCATAGATGTGAAGTATGTGTGGAATCAAAAATGACCAAAGCACCTTTTCATTCCACTAAGAGA
ATGACCAAACCTTTAGAGTTAATTCACAGTGATATTTGTGACTTGAAATTTGTGCAAACTAGAGGTGGGAAAAAGTATTTTATTACTTTTATAGATGATTGCACAAGATA
TTGTTATGTTTATCTGCTGAAAAGCAAAGATGAGGCAGTTGAAGTGTTTAAGCTTTATAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTTAAGTTGGTATTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATGTACATTGGAAAAGGTTATCTGAGTGATGGTCTGTTTAAATTAAATGTACTCAC
AATTGTACCCAAAAGTATTAATAATAATAAACTATCTACTTTTGCTTATATTGTTAAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTCTTTGCGTA
GGCTGATTAATATGAACTTGATTCCAAAATTCACCTTTGATACAAGTCATAGATGTGAAGTATGTGTGGAATCAAAAATGACCAAAGCACCTTTTCATTCCACTAAGAGA
ATGACCAAACCTTTAGAGTTAATTCACAGTGATATTTGTGACTTGAAATTTGTGCAAACTAGAGGTGGGAAAAAGTATTTTATTACTTTTATAGATGATTGCACAAGATA
TTGTTATGTTTATCTGCTGAAAAGCAAAGATGAGGCAGTTGAAGTGTTTAAGCTTTATAAATAA
Protein sequenceShow/hide protein sequence
MAFKLVFVSDKFVLSKNEMYIGKGYLSDGLFKLNVLTIVPKSINNNKLSTFAYIVKSFVWHGRLGHVNFNSLRRLINMNLIPKFTFDTSHRCEVCVESKMTKAPFHSTKR
MTKPLELIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYK