; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0052301 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0052301
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr02:19514853..19515626
RNA-Seq ExpressionCmc02g0052301
SyntenyCmc02g0052301
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061922.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]2.2e-13488.72Show/hide
Query:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL
        MW YK+RLVLSKTSKLIPTMLHTFHDS+VG HSGFL+TYKRLASELYWPGMK+DVQ+YCE+CVVCQRNKTVALSPAGLLTPLE PQQVWS ISMDFVEGL
Subjt:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL

Query:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY
        PK KGFEVVLVVVDRLSKY+HFIPLKHPYTAKTVAE FVKEIVRLHGFPSSI S+RD++FLS FWKEMFRLAGT+LNKSTAYHPQSDGQT+VVNRGLE Y
Subjt:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY

Query:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN
        LRCFC+EKP+EWV WLPWAEYWY TT QRSLGVSPFQ LYGRKPPSLISYG+ ATSN
Subjt:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN

KAA0062662.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]2.3e-123100Show/hide
Query:  MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY
        MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY
Subjt:  MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY

Query:  SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA
        SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA
Subjt:  SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA

Query:  EYWYKTTFQRSL
        EYWYKTTFQRSL
Subjt:  EYWYKTTFQRSL

TYJ98385.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]1.4e-12580.54Show/hide
Query:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL
        +WHYKDRLVLSK+S LIP +L T+HDSVVG HSGFLRTYKRLASELYWP MK DV+KYCE+C+VCQRNKT+ALSPAGLLTPLE+P QVW+DISMDF++ L
Subjt:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL

Query:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY
        P+ KGFEVV VVVDRLSKY+HFIPLKHPYTAK+VA+ FVKE+VRLHGFP+SI S+RD++FLSNFWKEMFRLAGTKLN+STAYHPQSDGQT+VVN GLETY
Subjt:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY

Query:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN
        LRCFCSE+P+EWV WL WAEYWY TT+ RSLG SPFQ LYGRKPPSL+SYG   T+N
Subjt:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN

TYK01196.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]2.3e-123100Show/hide
Query:  MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY
        MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY
Subjt:  MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY

Query:  SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA
        SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA
Subjt:  SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA

Query:  EYWYKTTFQRSL
        EYWYKTTFQRSL
Subjt:  EYWYKTTFQRSL

TYK24006.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]2.2e-13488.72Show/hide
Query:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL
        MW YK+RLVLSKTSKLIPTMLHTFHDS+VG HSGFL+TYKRLASELYWPGMK+DVQ+YCE+CVVCQRNKTVALSPAGLLTPLE PQQVWS ISMDFVEGL
Subjt:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL

Query:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY
        PK KGFEVVLVVVDRLSKY+HFIPLKHPYTAKTVAE FVKEIVRLHGFPSSI S+RD++FLS FWKEMFRLAGT+LNKSTAYHPQSDGQT+VVNRGLE Y
Subjt:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY

Query:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN
        LRCFC+EKP+EWV WLPWAEYWY TT QRSLGVSPFQ LYGRKPPSLISYG+ ATSN
Subjt:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN

TrEMBL top hitse value%identityAlignment
A0A5A7V139 Transposon Tf2-9 polyprotein1.1e-13488.72Show/hide
Query:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL
        MW YK+RLVLSKTSKLIPTMLHTFHDS+VG HSGFL+TYKRLASELYWPGMK+DVQ+YCE+CVVCQRNKTVALSPAGLLTPLE PQQVWS ISMDFVEGL
Subjt:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL

Query:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY
        PK KGFEVVLVVVDRLSKY+HFIPLKHPYTAKTVAE FVKEIVRLHGFPSSI S+RD++FLS FWKEMFRLAGT+LNKSTAYHPQSDGQT+VVNRGLE Y
Subjt:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY

Query:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN
        LRCFC+EKP+EWV WLPWAEYWY TT QRSLGVSPFQ LYGRKPPSLISYG+ ATSN
Subjt:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN

A0A5A7V361 Putative retroelement pol polyprotein1.1e-123100Show/hide
Query:  MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY
        MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY
Subjt:  MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY

Query:  SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA
        SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA
Subjt:  SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA

Query:  EYWYKTTFQRSL
        EYWYKTTFQRSL
Subjt:  EYWYKTTFQRSL

A0A5D3BJ44 Retrotransposon protein, putative, unclassified6.9e-12680.54Show/hide
Query:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL
        +WHYKDRLVLSK+S LIP +L T+HDSVVG HSGFLRTYKRLASELYWP MK DV+KYCE+C+VCQRNKT+ALSPAGLLTPLE+P QVW+DISMDF++ L
Subjt:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL

Query:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY
        P+ KGFEVV VVVDRLSKY+HFIPLKHPYTAK+VA+ FVKE+VRLHGFP+SI S+RD++FLSNFWKEMFRLAGTKLN+STAYHPQSDGQT+VVN GLETY
Subjt:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY

Query:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN
        LRCFCSE+P+EWV WL WAEYWY TT+ RSLG SPFQ LYGRKPPSL+SYG   T+N
Subjt:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN

A0A5D3BSJ2 Putative retroelement pol polyprotein1.1e-123100Show/hide
Query:  MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY
        MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY
Subjt:  MLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVLVVVDRLSKY

Query:  SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA
        SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA
Subjt:  SHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWA

Query:  EYWYKTTFQRSL
        EYWYKTTFQRSL
Subjt:  EYWYKTTFQRSL

A0A5D3DK67 Transposon Tf2-9 polyprotein1.1e-13488.72Show/hide
Query:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL
        MW YK+RLVLSKTSKLIPTMLHTFHDS+VG HSGFL+TYKRLASELYWPGMK+DVQ+YCE+CVVCQRNKTVALSPAGLLTPLE PQQVWS ISMDFVEGL
Subjt:  MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGL

Query:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY
        PK KGFEVVLVVVDRLSKY+HFIPLKHPYTAKTVAE FVKEIVRLHGFPSSI S+RD++FLS FWKEMFRLAGT+LNKSTAYHPQSDGQT+VVNRGLE Y
Subjt:  PKTKGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETY

Query:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN
        LRCFC+EKP+EWV WLPWAEYWY TT QRSLGVSPFQ LYGRKPPSLISYG+ ATSN
Subjt:  LRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.9e-3629.58Show/hide
Query:  KDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTK
        KD+++L   ++L  T++  +H+    +H G       +     W G+++ +Q+Y + C  CQ NK+    P G L P+   ++ W  +SMDF+  LP++ 
Subjt:  KDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTK

Query:  GFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCF
        G+  + VVVDR SK +  +P     TA+  A  F + ++   G P  I ++ D +F S  WK+        +  S  Y PQ+DGQT+  N+ +E  LRC 
Subjt:  GFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCF

Query:  CSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP
        CS  P  WV  +   +  Y      +  ++PF+ ++   P
Subjt:  CSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP

P0CT41 Transposon Tf2-12 polyprotein4.9e-3629.58Show/hide
Query:  KDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTK
        KD+++L   ++L  T++  +H+    +H G       +     W G+++ +Q+Y + C  CQ NK+    P G L P+   ++ W  +SMDF+  LP++ 
Subjt:  KDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTK

Query:  GFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCF
        G+  + VVVDR SK +  +P     TA+  A  F + ++   G P  I ++ D +F S  WK+        +  S  Y PQ+DGQT+  N+ +E  LRC 
Subjt:  GFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCF

Query:  CSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP
        CS  P  WV  +   +  Y      +  ++PF+ ++   P
Subjt:  CSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein9.8e-3736.59Show/hide
Query:  MWHYKDRLVLSKTSKLIPTMLHTFHD-SVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEG
        M +Y+DRLV+    K    ++  +HD ++ G H G   T  +++   YWP ++  + +Y   CV CQ  K+      GLL PL I +  W DISMDFV G
Subjt:  MWHYKDRLVLSKTSKLIPTMLHTFHD-SVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEG

Query:  LPKT-KGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLE
        LP T     ++LVVVDR SK +HFI  +    A  + +   + I   HGFP +I S+RD    ++ ++E+ +  G K   S+A HPQ+DGQ++   + L 
Subjt:  LPKT-KGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLE

Query:  TYLRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP
          LR + S   + W  +LP  E+ Y +T  R+LG SPF+   G  P
Subjt:  TYLRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.5e-3736.59Show/hide
Query:  MWHYKDRLVLSKTSKLIPTMLHTFHD-SVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEG
        M +Y+DRLV+    K    ++  +HD ++ G H G   T  +++   YWP ++  + +Y   CV CQ  K+      GLL PL I +  W DISMDFV G
Subjt:  MWHYKDRLVLSKTSKLIPTMLHTFHD-SVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEG

Query:  LPKT-KGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLE
        LP T     ++LVVVDR SK +HFI  +    A  + +   + I   HGFP +I S+RD    ++ ++E+ +  G K   S+A HPQ+DGQ++   + L 
Subjt:  LPKT-KGFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLE

Query:  TYLRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP
          LR + S   + W  +LP  E+ Y +T  R+LG SPF+   G  P
Subjt:  TYLRCFCSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP

Q9UR07 Transposon Tf2-11 polyprotein4.9e-3629.58Show/hide
Query:  KDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTK
        KD+++L   ++L  T++  +H+    +H G       +     W G+++ +Q+Y + C  CQ NK+    P G L P+   ++ W  +SMDF+  LP++ 
Subjt:  KDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTK

Query:  GFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCF
        G+  + VVVDR SK +  +P     TA+  A  F + ++   G P  I ++ D +F S  WK+        +  S  Y PQ+DGQT+  N+ +E  LRC 
Subjt:  GFEVVLVVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCF

Query:  CSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP
        CS  P  WV  +   +  Y      +  ++PF+ ++   P
Subjt:  CSEKPREWVWWLPWAEYWYKTTFQRSLGVSPFQALYGRKP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCATTATAAGGATCGCTTGGTTTTGTCGAAGACTTCAAAATTAATCCCAACTATGCTACACACCTTTCACGACTCAGTAGTGGGAGTACATTCAGGATTCTTACG
AACTTACAAGAGATTAGCAAGTGAATTATATTGGCCGGGGATGAAAAGAGATGTTCAGAAATACTGTGAACAATGCGTAGTTTGTCAACGAAACAAGACCGTGGCTTTAT
CTCCAGCGGGCCTCCTAACTCCTCTAGAAATTCCCCAGCAAGTTTGGAGCGACATCTCTATGGACTTTGTTGAAGGATTACCTAAGACTAAGGGATTTGAAGTGGTGTTA
GTAGTGGTTGATCGGCTAAGTAAATACAGTCACTTTATACCGCTCAAACACCCCTATACAGCTAAAACAGTAGCAGAAGCATTTGTTAAAGAAATTGTTCGGCTGCATGG
ATTTCCCTCATCAATTGGCTCAAATAGAGATAGAGTTTTTCTCAGCAATTTTTGGAAGGAGATGTTTAGATTAGCAGGAACAAAGTTGAATAAGAGTACCGCATACCATC
CACAATCGGATGGCCAAACGAAAGTGGTAAACAGAGGGCTTGAGACCTATTTGCGCTGTTTTTGTAGTGAGAAGCCAAGGGAATGGGTATGGTGGTTACCATGGGCTGAG
TATTGGTACAAGACTACCTTTCAACGCTCATTAGGTGTGTCACCTTTTCAAGCGTTATATGGTCGAAAACCTCCATCATTGATATCATATGGGATCAAAGCTACATCTAA
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCATTATAAGGATCGCTTGGTTTTGTCGAAGACTTCAAAATTAATCCCAACTATGCTACACACCTTTCACGACTCAGTAGTGGGAGTACATTCAGGATTCTTACG
AACTTACAAGAGATTAGCAAGTGAATTATATTGGCCGGGGATGAAAAGAGATGTTCAGAAATACTGTGAACAATGCGTAGTTTGTCAACGAAACAAGACCGTGGCTTTAT
CTCCAGCGGGCCTCCTAACTCCTCTAGAAATTCCCCAGCAAGTTTGGAGCGACATCTCTATGGACTTTGTTGAAGGATTACCTAAGACTAAGGGATTTGAAGTGGTGTTA
GTAGTGGTTGATCGGCTAAGTAAATACAGTCACTTTATACCGCTCAAACACCCCTATACAGCTAAAACAGTAGCAGAAGCATTTGTTAAAGAAATTGTTCGGCTGCATGG
ATTTCCCTCATCAATTGGCTCAAATAGAGATAGAGTTTTTCTCAGCAATTTTTGGAAGGAGATGTTTAGATTAGCAGGAACAAAGTTGAATAAGAGTACCGCATACCATC
CACAATCGGATGGCCAAACGAAAGTGGTAAACAGAGGGCTTGAGACCTATTTGCGCTGTTTTTGTAGTGAGAAGCCAAGGGAATGGGTATGGTGGTTACCATGGGCTGAG
TATTGGTACAAGACTACCTTTCAACGCTCATTAGGTGTGTCACCTTTTCAAGCGTTATATGGTCGAAAACCTCCATCATTGATATCATATGGGATCAAAGCTACATCTAA
TTAA
Protein sequenceShow/hide protein sequence
MWHYKDRLVLSKTSKLIPTMLHTFHDSVVGVHSGFLRTYKRLASELYWPGMKRDVQKYCEQCVVCQRNKTVALSPAGLLTPLEIPQQVWSDISMDFVEGLPKTKGFEVVL
VVVDRLSKYSHFIPLKHPYTAKTVAEAFVKEIVRLHGFPSSIGSNRDRVFLSNFWKEMFRLAGTKLNKSTAYHPQSDGQTKVVNRGLETYLRCFCSEKPREWVWWLPWAE
YWYKTTFQRSLGVSPFQALYGRKPPSLISYGIKATSN