; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0052341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0052341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr02:19666749..19667777
RNA-Seq ExpressionCmc02g0052341
SyntenyCmc02g0052341
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031392147.1 uncharacterized protein LOC116204210 [Punica granatum]1.7e-14269.59Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLA +SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTV+ DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

XP_031392309.1 uncharacterized protein LOC116204368 [Punica granatum]5.9e-14369.88Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLA +SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTVY DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

XP_031393661.1 uncharacterized protein LOC116205261 [Punica granatum]1.7e-14269.59Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLA +SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTV+ DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

XP_031400978.1 uncharacterized protein LOC116210952 [Punica granatum]5.9e-14369.88Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLAS+SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTV+ DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

XP_031402684.1 uncharacterized protein LOC116212259 [Punica granatum]1.7e-14269.59Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLA +SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTV+ DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

TrEMBL top hitse value%identityAlignment
A0A6P8D4X0 Reverse transcriptase8.3e-14369.59Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLA +SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTV+ DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

A0A6P8DCT8 Reverse transcriptase2.8e-14369.88Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLA +SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTVY DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

A0A6P8DJV3 Reverse transcriptase8.3e-14369.59Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLA +SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTV+ DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

A0A6P8E7C5 Reverse transcriptase2.8e-14369.88Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLAS+SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTV+ DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

A0A6P8E830 Reverse transcriptase8.3e-14369.59Show/hide
Query:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP
        MHRI+LE+ A+ K  PQR LNPT+KEVVMKE+LKL D GIIY + DS WVSPIHVVPKK G+T VKN++GE+V  ++QNGWR+CIDYRKLN  T+KDHFP
Subjt:  MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFP

Query:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS
        LPF+DQM+ERLA +SYFCFLDG+SG+YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQRCMMSI SD IE CIEVFMDDFTV+ DSFD CLA+
Subjt:  LPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLAS

Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN
        L  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D I  L Y + ++ +RSFLG AGFYRRFIKDFSKIA PL +LLQKD  F+   N
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDN

Query:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        C++AF+ LK+ L S  I+Q P+W LPFEIM DAS+ A+G VL
Subjt:  CKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.4e-5236.68Show/hide
Query:  KEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFCFLDGFS
        ++ V  ++  + + GII    +S + SPI VVPKK   +              +  +R+ IDYRKLNE+T  D  P+P +D+++ +L   +YF  +D   
Subjt:  KEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFCFLDGFS

Query:  GFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKCHFMM
        GF+QI +  E   KT F+  +G Y + RM FGL NAP TFQRCM  I+   + K   V++DD  V+S S D  L SL L+  +  + NL L  +KC F+ 
Subjt:  GFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKCHFMM

Query:  SHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPF-LIDDNCKKAFNDLKQRLVSTLILQSPNW
             LGH+++  GI+ +  KI+ IQK    T  K++++FLG  G+YR+FI +F+ IA P+T  L+K++     +     AF  LK  +    IL+ P++
Subjt:  SHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPF-LIDDNCKKAFNDLKQRLVSTLILQSPNW

Query:  NLPFEIMCDASNLALGVVL
           F +  DAS++ALG VL
Subjt:  NLPFEIMCDASNLALGVVL

P10394 Retrovirus-related Pol polyprotein from transposon 4122.4e-4637.5Show/hide
Query:  STWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYG
        S + SP+ +VPKK   ++  +DK +         WR+ IDYR++N+    D FPLP +D ++++L    YF  LD  SGF+QI +    +  T+F+   G
Subjt:  STWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYG

Query:  TYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKI
        +Y F R+ FGL  AP +FQR M    S        ++MDD  V   S    L +L  +  +C E NL L+ EKC F M     LGH  + KGI  D  K 
Subjt:  TYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKI

Query:  DFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL
        D IQ           R F+    +YRRFIK+F+  +  +T L +K+VPF   D C+KAF  LK +L++  +LQ P+++  F I  DAS  A G VL
Subjt:  DFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFNDLKQRLVSTLILQSPNWNLPFEIMCDASNLALGVVL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy3.2e-4334.52Show/hide
Query:  PTL---KEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFC
        PTL    + V  EV +L   GII     S + SP  VV KK G  A  N              R+ ID+RKLNE T  D +P+P +  ++  L    +F 
Subjt:  PTL---KEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFC

Query:  FLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYE
         LD  SG++QI +A  D++KT+F+ + G Y F R+ FGL NA   FQR +  ++ + I K   V++DD  ++S++    +  ++ +L   I+ N+ ++ E
Subjt:  FLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYE

Query:  KCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFND
        K  F       LG +VS  G + D  K+  IQ+     C+  VRSFLG A +YR FIKDF+ IA P+T++L+           K +P   ++  + AF  
Subjt:  KCHFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFND

Query:  LKQRLVS-TLILQSPNWNLPFEIMCDASNLALGVVL
        L+  L S  +IL+ P++  PF++  DAS   +G VL
Subjt:  LKQRLVS-TLILQSPNWNLPFEIMCDASNLALGVVL

P20825 Retrovirus-related Pol polyprotein from transposon 2971.2e-5036.68Show/hide
Query:  VMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFCFLDGFSGFY
        V  +V ++ + G+I    +S + SP  VVPKK   +               N +R+ IDYRKLNE+T  D +P+P +D+++ +L    YF  +D   GF+
Subjt:  VMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFCFLDGFSGFY

Query:  QISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKCHFMMSHG
        QI +  E   KT F+   G Y + RM FGL NAP TFQRCM +I+   + K   V++DD  ++S S    L S++L+  +  + NL L  +KC F+    
Subjt:  QISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKCHFMMSHG

Query:  IVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCK----KAFNDLKQRLVSTLILQSPNW
          LGH+V+  GI+ +  K+  I      T  K++R+FLG  G+YR+FI +++ IA P+T+ L+K       D  K    +AF  LK  ++   ILQ P++
Subjt:  IVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCK----KAFNDLKQRLVSTLILQSPNW

Query:  NLPFEIMCDASNLALGVVL
           F +  DASNLALG VL
Subjt:  NLPFEIMCDASNLALGVVL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.2e-5136.5Show/hide
Query:  VMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFCFLDGFSGFY
        V +++ +L   GII    +S + SPI +VPKK          GE         +RM +D+++LN VT  D +P+P ++  +  L +  YF  LD  SGF+
Subjt:  VMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIERLASRSYFCFLDGFSGFY

Query:  QISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKCHFMMSHG
        QI +   D  KT F+   G Y F R+ FGL NAP  FQR +  I+ + I K   V++DD  V+S+ +D    +L L+L    + NL +N EK HF+ +  
Subjt:  QISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKCHFMMSHG

Query:  IVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFNDLKQRLVSTL
          LG++V++ GI+ D  K+  I ++   T +K+++ FLG   +YR+FI+D++K+A PLTNL +             VP  +D+   ++FNDLK  L S+ 
Subjt:  IVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFNDLKQRLVSTL

Query:  ILQSPNWNLPFEIMCDASNLALGVVL
        IL  P +  PF +  DASN A+G VL
Subjt:  ILQSPNWNLPFEIMCDASNLALGVVL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.0e-1131.78Show/hide
Query:  LELILNRCIETNLVLNYEKCHFMMSHGIVLG--HLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLID
        L ++L    +     N +KC F       LG  H++S +G+  D AK++ +          ++R FLG  G+YRRF+K++ KI  PLT LL+K+      
Subjt:  LELILNRCIETNLVLNYEKCHFMMSHGIVLG--HLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLID

Query:  DNCKKAFNDLKQRLVSTLILQSPNWNLPF
        +    AF  LK  + +  +L  P+  LPF
Subjt:  DNCKKAFNDLKQRLVSTLILQSPNWNLPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCGTATTATCTTGGAGGAGGGAGCAAAAGAAAAAATCCAACCACAAAGAGGGCTTAACCCAACATTGAAGGAAGTTGTCATGAAAGAGGTACTAAAGCTAAAAGA
TGCTGGAATTATCTACCACGTCCCGGATAGTACATGGGTAAGTCCAATTCATGTGGTCCCAAAGAAGATCGGGATGACCGCTGTGAAGAACGACAAAGGTGAGATGGTTT
CGATGCAAATGCAAAATGGTTGGAGAATGTGCATAGATTATCGAAAACTCAATGAGGTAACAAAAAAGGATCATTTCCCCTTACCTTTTCTTGATCAAATGATAGAACGT
TTAGCAAGTAGATCATATTTTTGTTTCTTAGATGGATTTTCCGGTTTTTACCAAATTTCTATAGCATGTGAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAAC
TTATGCATTTAGGCGTATGTCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATAATTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCA
TGGATGATTTCACAGTTTATAGTGATAGTTTTGATGCATGTTTAGCTAGTCTTGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTATTGAATTATGAAAAGTGT
CATTTCATGATGTCTCATGGTATAGTTTTAGGACACTTAGTGTCTTCCAAAGGAATAGAGGTAGATAAAGCAAAAATTGACTTTATACAAAAATTGTCATATGCAACATG
TTTAAAAGATGTTAGATCCTTCCTTGGTAGTGCCGGCTTTTATAGACGATTTATAAAAGATTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTAC
CATTTCTGATTGATGACAATTGTAAGAAGGCATTTAATGATCTCAAACAAAGGTTAGTCTCTACCCTTATCCTTCAATCTCCTAATTGGAATTTACCTTTCGAAATAATG
TGTGATGCAAGCAACTTAGCATTAGGAGTTGTTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCGTATTATCTTGGAGGAGGGAGCAAAAGAAAAAATCCAACCACAAAGAGGGCTTAACCCAACATTGAAGGAAGTTGTCATGAAAGAGGTACTAAAGCTAAAAGA
TGCTGGAATTATCTACCACGTCCCGGATAGTACATGGGTAAGTCCAATTCATGTGGTCCCAAAGAAGATCGGGATGACCGCTGTGAAGAACGACAAAGGTGAGATGGTTT
CGATGCAAATGCAAAATGGTTGGAGAATGTGCATAGATTATCGAAAACTCAATGAGGTAACAAAAAAGGATCATTTCCCCTTACCTTTTCTTGATCAAATGATAGAACGT
TTAGCAAGTAGATCATATTTTTGTTTCTTAGATGGATTTTCCGGTTTTTACCAAATTTCTATAGCATGTGAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAAC
TTATGCATTTAGGCGTATGTCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATAATTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCA
TGGATGATTTCACAGTTTATAGTGATAGTTTTGATGCATGTTTAGCTAGTCTTGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTATTGAATTATGAAAAGTGT
CATTTCATGATGTCTCATGGTATAGTTTTAGGACACTTAGTGTCTTCCAAAGGAATAGAGGTAGATAAAGCAAAAATTGACTTTATACAAAAATTGTCATATGCAACATG
TTTAAAAGATGTTAGATCCTTCCTTGGTAGTGCCGGCTTTTATAGACGATTTATAAAAGATTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTAC
CATTTCTGATTGATGACAATTGTAAGAAGGCATTTAATGATCTCAAACAAAGGTTAGTCTCTACCCTTATCCTTCAATCTCCTAATTGGAATTTACCTTTCGAAATAATG
TGTGATGCAAGCAACTTAGCATTAGGAGTTGTTTTATGA
Protein sequenceShow/hide protein sequence
MHRIILEEGAKEKIQPQRGLNPTLKEVVMKEVLKLKDAGIIYHVPDSTWVSPIHVVPKKIGMTAVKNDKGEMVSMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMIER
LASRSYFCFLDGFSGFYQISIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQRCMMSIISDFIEKCIEVFMDDFTVYSDSFDACLASLELILNRCIETNLVLNYEKC
HFMMSHGIVLGHLVSSKGIEVDKAKIDFIQKLSYATCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFNDLKQRLVSTLILQSPNWNLPFEIM
CDASNLALGVVL