CuGenDBv2

Gene ID	Cmc02g0052371
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Tf2-6 polyprotein
Genome location	CMiso1.1chr02:19689384..19689908
RNA-Seq Expression	Cmc02g0052371
Synteny	Cmc02g0052371
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033035.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

1.1e-94

97.13

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAF THEGHYEFLVMPFGLTNAP TFQALMNSIFRPFLRKFVLVFF+DILIYSKN+KDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

TYK02030.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]

6.7e-95

97.13

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMNSIFRPFLRKFVLVFFDDILIYSKN+KDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

TYK02195.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.7e-95

97.13

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMNSIFRPFLRKFVLVFFDDILIYSKN+KDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

TYK06548.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]

6.7e-95

97.13

Show/hide

Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMNSIFRPFLRKFVLVFFDDILIYSKN+KDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

TYK23779.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.1e-96

98.28

Show/hide

Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKN+KDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SV50 Transposon Tf2-6 polyprotein

5.6e-95

97.13

Show/hide

Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAF THEGHYEFLVMPFGLTNAP TFQALMNSIFRPFLRKFVLVFF+DILIYSKN+KDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

A0A5D3BSD7 Putative retroelement pol polyprotein

3.3e-95

97.13

Show/hide

Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMNSIFRPFLRKFVLVFFDDILIYSKN+KDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

A0A5D3BSP2 Ty3/gypsy retrotransposon protein

3.3e-95

97.13

Show/hide

Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMNSIFRPFLRKFVLVFFDDILIYSKN+KDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

A0A5D3C5V5 Putative retroelement pol polyprotein

3.3e-95

97.13

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMNSIFRPFLRKFVLVFFDDILIYSKN+KDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

A0A5D3DKH5 Ty3/gypsy retrotransposon protein

3.0e-96

98.28

Show/hide

Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKN+KDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF
        GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSI APLTQLLKKGGFKWNEDAEESF
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

9.3e-39

44.1

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        M  + + KTAF T  GHYE+L MPFGL NAP TFQ  MN I RP L K  LV+ DDI+++S +  +H++ +  VF  L K  L     KC F +++  +L
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKK
        GH+++ +G++ + EKI+ +  +P PT  +E++ FLGLTGYYR+F+ ++  I  P+T+ LKK
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.1e-31

38.12

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        + + D  KT+F  + G YEF  +PFGL NA + FQ  ++ + R  + K   V+ DD++I+S+N+ DH+ HI+ V   L    +  +++K  F ++ VEYL
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLK
        G I+S +G + D EK+K + ++P P  + +VR FLGL  YYR F++ + +I  P+T +LK
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLK

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.3e-40

47.2

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        M ++ I KTAF T  GHYE+L MPFGL NAP TFQ  MN+I RP L K  LV+ DDI+I+S +  +H+  I+ VF  L    L     KC F +K+  +L
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKK
        GHI++ +G++ +  K+K +  +P PT  +E+R FLGLTGYYR+F+ +Y  I  P+T  LKK
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

9.6e-36

40.62

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        M + DIPKTAF T  G YEFL +PFGL NAP  FQ +++ I R  + K   V+ DDI+++S++   H +++  V  +L K  L  N +K +F   +VE+L
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLK
        G+I++ +G++ D +K++ +++ P PT+++E++ FLG+T YYR+F+Q Y  +  PLT L +
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLK

Q99315 Transposon Ty3-G Gag-Pol polyprotein

7.9e-30

38.15

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Query:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL
        M  KD  KTAF T  G YE+ VMPFGL NAP+TF   M   FR    +FV V+ DDILI+S++ ++H +H++ V   L+   L   KKKC F  ++ E+L
Subjt:  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYL

Query:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEES
        G+ I  + +     K   + D+P P  +++ + FLG+  YYRRF+ +   I  P+ QL      +W E  +++
Subjt:  GHIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEES

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

6.2e-30

54.13

Show/hide

Query:  IEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLG--HIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFK
        + H+  V     +H  +AN+KKC FGQ ++ YLG  HIISGEGV  D  K++ +  WP P N  E+RGFLGLTGYYRRFV++YG IV PLT+LLKK   K
Subjt:  IEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLG--HIISGEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFK

Query:  WNEDAEESF
        W E A  +F
Subjt:  WNEDAEESF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTGATAAAGATATTCCGAAGACGGCTTTTCGCACTCACGAAGGCCACTACGAATTCCTTGTTATGCCGTTTGGGCTAACCAACGCCCCGACCACTTTCCAAGCCTT
AATGAATAGCATCTTTAGACCATTTTTGAGAAAGTTTGTGCTGGTCTTCTTCGATGACATCCTGATCTATAGCAAGAATAAAAAAGACCACATAGAGCATATTGAAAAGG
TCTTTCTTGCATTGAGAAAGCATACCCTCTTCGCCAATAAAAAGAAGTGCAACTTTGGCCAGAAGAAGGTAGAATACTTGGGACATATCATATCAGGAGAAGGAGTGGAA
GTAGACTCGGAGAAAATAAAAGTTGTTGCAGATTGGCCATGTCCAACAAATATAAGAGAAGTTCGGGGATTCCTTGGATTAACAGGCTACTACAGGAGATTTGTCCAACA
TTATGGATCAATAGTAGCCCCATTAACCCAACTACTCAAAAAAGGGGGATTCAAATGGAACGAAGATGCGGAAGAATCGTTTTGA

mRNA sequence

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Protein sequence

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MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIYSKNKKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIISGEGVE
VDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIVAPLTQLLKKGGFKWNEDAEESF

Cmc02g0052371 (gene) of Melon (Charmono) v1.1 genome