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Cmc02g0052641 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0052641
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr02:20058137..20059374
RNA-Seq ExpressionCmc02g0052641
SyntenyCmc02g0052641
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045141.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.8e-1685.71Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
        +RLPENI ESEK+DMDEM YSTILL+LSDEVLRLVD+ATTT ELWKKLES YLTKS
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]2.8e-1685.71Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
        +RLP+NI ESEK+DMDEM YSTILL+LSDEVLRLVDEATTT ELWKKLES YLTKS
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]2.2e-1687.27Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTK
        ++LPENI ESEK+DMDEMTYSTILL+LSDEVLRLVDEATTT ELWKKLES YLTK
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTK
TYK11792.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.8e-1685.71Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
        +RLP+NI ESEK+DMDEM YSTILL+LSDEVLRLVDEATTT ELWKKLES YLTKS
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]2.8e-1685.71Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
        +RLP+NI ESEK+DMDEM YSTILL+LSDEVLRLVDEATTT ELWKKLES YLTKS
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
TrEMBL top hitse value%identityAlignment
A0A5A7TUE4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1685.71Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
        +RLPENI ESEK+DMDEM YSTILL+LSDEVLRLVD+ATTT ELWKKLES YLTKS
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
A0A5A7UB25 Putative gag-pol polyprotein1.4e-1685.71Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
        +RLP+NI ESEK+DMDEM YSTILL+LSDEVLRLVDEATTT ELWKKLES YLTKS
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass1.0e-1687.27Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTK
        ++LPENI ESEK+DMDEMTYSTILL+LSDEVLRLVDEATTT ELWKKLES YLTK
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTK
A0A5D3CQJ5 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1685.71Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
        +RLP+NI ESEK+DMDEM YSTILL+LSDEVLRLVDEATTT ELWKKLES YLTKS
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
A0A5D3DNU1 Putative gag-pol polyprotein1.4e-1685.71Show/hide
Query:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
        +RLP+NI ESEK+DMDEM YSTILL+LSDEVLRLVDEATTT ELWKKLES YLTKS
Subjt:  KRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGACTTCCAGAAAATATTGTAGAAAGTGAAAAAAAGGATATGGACGAAATGACTTATTCAACGATCCTTCTGTTTCTATCAGATGAAGTACTTAGGCTAGTGGA
TGAGGCTACTACTACAGTAGAGTTGTGGAAAAAGTTAGAGAGCTTTTACTTGACAAAGTCTTTTGCCAAATAA
mRNA sequenceShow/hide mRNA sequence
CTAGGCTTAAATAAATTTTTAAGTTGATGGTAGAATGGTTATTATGTTTTAATGTCATTTTTTATAAATATTCTTATCTTCTTCGTTTAGGTTATTAAAAAGAGAAGAAA
AGATGATTTTGGTGAGTGAGGGGCAGCCGCAGAAGAAGAAGAAGAAAACATAGAAGAGAGAGAGAGAGTATTGGTGAAGCCATTCGGTGGTGCTATTTTGCGGAGTTTTC
TGGCGAATAGAAAGAGCATTGCAGCGTGGTTTCGACTGCGTTCTTCAAGCGTTGGGTACCGACGGTTTTGGCCAACATTTGGGTCTTAGTTTTCAGGGCATTGACAGCAT
GTGTTGATGACAATTGCAACGTTGTGATCGGATGGATTTGGGCTTGTTTTAGGTTGGGATTTTAGTGGAGTTCTTCCGATATTCTTGGTGCTAATAGGCAGCGGGTTTTT
CATCTGTGGTTGCTCTTCTTGGCAGTTGGTTATTCGACACGTGGGTCTCCGGTCAAAGGAGGCAGTTTTCAGTGGGTTTTTGGGTCTCGATATCTGAGGCAACATCCAGA
ACGTGTCTCTCTCAGTTTCTTGGTTTTTTGGTCGACGGTAAAGTCGGGTACGACAATAAAATTACAAATGGCATATTATTTGTTAATATCCGTATTTTGTATCTTGATTG
ATATTGCTTTTAATAAAATCCCTCCAAGCTAGTTCTCAATGTGGATGGAGACAGAATTAGCCGAACCACTGTATATTTTTGTGTCTGTATCGTTTATTTTTTTATCGCTT
ACTTTGTAGTTATATGGCTATTACGTTCTGGTTGGTTTGGTGTTACCATACTCTAATTTAGTGCATGAATTCATAACAAGTGGTATCAGAGCTCCATTCAACCCAAAGAA
AATTTGGGTTTTGTTTAGTAGTTGGTTTAATCATTTTTTTGTAAAGATGACTTCGACACGGTTTGAAGTGTCTAAGTTTAATGGGAATGATGATTTCACTTTTTGGAAGA
AAAAGATTAGAGCAATTTTGGTTCAACATAAAGTAGTAAAAATCTTAGATGAAGAGACTTCCAGAAAATATTGTAGAAAGTGAAAAAAAGGATATGGACGAAATGACTTA
TTCAACGATCCTTCTGTTTCTATCAGATGAAGTACTTAGGCTAGTGGATGAGGCTACTACTACAGTAGAGTTGTGGAAAAAGTTAGAGAGCTTTTACTTGACAAAGTCTT
TTGCCAAATAAATTATATCTAAAGGAGA
Protein sequenceShow/hide protein sequence
MKRLPENIVESEKKDMDEMTYSTILLFLSDEVLRLVDEATTTVELWKKLESFYLTKSFAK