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Cmc02g0052781 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0052781
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLPS-induced tumor necrosis factor alpha factor
Genome locationCMiso1.1chr02:20159191..20159541
RNA-Seq ExpressionCmc02g0052781
SyntenyCmc02g0052781
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054811.1 hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa]4.6e-0566.67Show/hide
Query:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG
        MG V   L+MA  C  AVA GASV+M VAP LTPVVAP+MA  TVATSV GV  ILG
Subjt:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG

KAA0068093.1 LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa]2.3e-0472.34Show/hide
Query:  AGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI
        A C   VA GASV+M VAP LTPVVAP+MA ATVATS+ GV GILGI
Subjt:  AGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI

KGN65426.1 hypothetical protein Csa_019847 [Cucumis sativus]4.9e-0751.58Show/hide
Query:  MAIYTKDPTS-YFSSPIKIYNIYKRKKEKSYIYIYTKMGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI
        MAIYTKDP+S YFSSPI                   KMG    AL++AA C  AVA  ++V+M VAP L PVVAP+M  ATV TSV GV  I GI
Subjt:  MAIYTKDPTS-YFSSPIKIYNIYKRKKEKSYIYIYTKMGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI

TYJ99647.1 hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa]2.7e-0566.67Show/hide
Query:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG
        MG V   L+MA  C  AVA GASV+M VAP LTPVVAP+MA  TVATSV GV  ILG
Subjt:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG

TrEMBL top hitse value%identityAlignment
A0A0A0LZP7 Uncharacterized protein2.4e-0751.58Show/hide
Query:  MAIYTKDPTS-YFSSPIKIYNIYKRKKEKSYIYIYTKMGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI
        MAIYTKDP+S YFSSPI                   KMG    AL++AA C  AVA  ++V+M VAP L PVVAP+M  ATV TSV GV  I GI
Subjt:  MAIYTKDPTS-YFSSPIKIYNIYKRKKEKSYIYIYTKMGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI

A0A5A7UMM6 Uncharacterized protein2.2e-0566.67Show/hide
Query:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG
        MG V   L+MA  C  AVA GASV+M VAP LTPVVAP+MA  TVATSV GV  ILG
Subjt:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG

A0A5D3BKI7 Uncharacterized protein1.3e-0566.67Show/hide
Query:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG
        MG V   L+MA  C  AVA GASV+M VAP LTPVVAP+MA  TVATSV GV  ILG
Subjt:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG

A0A5D3CE01 Uncharacterized protein9.3e-0460.34Show/hide
Query:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI
        M  V  AL+MAA C  AVA GASV+M VAP LTPVVAP+M  A V TSV  V  +LG+
Subjt:  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI

A0A5D3DRF6 LPS-induced tumor necrosis factor alpha factor1.1e-0472.34Show/hide
Query:  AGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI
        A C   VA GASV+M VAP LTPVVAP+MA ATVATS+ GV GILGI
Subjt:  AGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATATATACGAAGGATCCTACTTCTTATTTTTCATCGCCAATCAAAATCTATAATATATACAAGAGAAAGAAAGAGAAGAGCTACATATATATATATACAAAAAT
GGGGGCTGTTTTGGGAGCTTTGAGGATGGCGGCTGGTTGTGTTGTGGCCGTGGCAAGGGGTGCATCAGTGATTATGATGGTGGCACCAACTCTGACCCCTGTTGTTGCTC
CTCTCATGGCTGTAGCCACTGTTGCTACGTCGGTCAATGGTGTTACGGGGATTTTAGGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATATATACGAAGGATCCTACTTCTTATTTTTCATCGCCAATCAAAATCTATAATATATACAAGAGAAAGAAAGAGAAGAGCTACATATATATATATACAAAAAT
GGGGGCTGTTTTGGGAGCTTTGAGGATGGCGGCTGGTTGTGTTGTGGCCGTGGCAAGGGGTGCATCAGTGATTATGATGGTGGCACCAACTCTGACCCCTGTTGTTGCTC
CTCTCATGGCTGTAGCCACTGTTGCTACGTCGGTCAATGGTGTTACGGGGATTTTAGGAATTTGATGATTATATTAAAATTATGTGCTGTGGAAAACTTATGTTTATAAT
GAAATTGGCTTGAACTATTGC
Protein sequenceShow/hide protein sequence
MAIYTKDPTSYFSSPIKIYNIYKRKKEKSYIYIYTKMGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI