CuGenDBv2

Gene ID	Cmc02g0053061
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribosomal protein S4
Genome location	CMiso1.1chr02:20510729..20511196
RNA-Seq Expression	Cmc02g0053061
Synteny	Cmc02g0053061
Gene Ontology terms	GO:0045903 - positive regulation of translational fidelity (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR022801 - Ribosomal protein S4/S9

Homology

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GenBank top hits

e value

%identity

Alignment

AEN56127.1 ribosomal protein S4 [Cucumis melo subsp. melo]

3.3e-61

90.3

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRR+EKNLNLPT +RSPIE+NSSLYSN TY   SPHQFTMKSKIKSLS+PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

KAA0032616.1 ribosomal protein S4 [Cucumis melo var. makuwa]

3.3e-61

90.3

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRR+EKNLNLPT +RSPIE+NSSLYSN TY   SPHQFTMKSKIKSLS+PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

WP_131747055.1 hypothetical protein [Candidatus Frankia meridionalis]

1.6e-55

83.58

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEH RMKRN YHF+SLFLSNRR EKN NLPT  RSPI  NSSLYSN TY   SPHQFTMK KIK + +PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

YP_004849334.1 ribosomal protein S4 [Cucumis sativus]

9.7e-61

89.55

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRR+EKNLNLPT +RSPIE+NSS YSN TY   SPHQFTMKSKIKSLS+PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

YP_009913620.1 ribosomal protein S4 [Luffa acutangula]

7.2e-56

84.33

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEH RMKRNLYH +SLFLSNRR EKN NLPT  RSPI  NSSLYSN TY   SPHQFTMKSKIK + +PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

TrEMBL top hits

e value

%identity

Alignment

A0A3S9JII7 Ribosomal protein S4

1.6e-61

90.3

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRR+EKNLNLPT +RSPIE+NSSLYSN TY   SPHQFTMKSKIKSLS+PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

A0A5A7SRE6 Ribosomal protein S4 (Mitochondrion)

1.6e-61

90.3

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRR+EKNLNLPT +RSPIE+NSSLYSN TY   SPHQFTMKSKIKSLS+PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

A0A7D6BZG8 Ribosomal protein S4

3.5e-56

84.33

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEH RMKRNLYH +SLFLSNRR EKN NLPT  RSPI  NSSLYSN TY   SPHQFTMKSKIK + +PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

G3EIY6 Ribosomal protein S4

4.7e-61

89.55

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRR+EKNLNLPT +RSPIE+NSS YSN TY   SPHQFTMKSKIKSLS+PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

G3EU07 Ribosomal protein S4

1.6e-61

90.3

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV
        LER KKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRR+EKNLNLPT +RSPIE+NSSLYSN TY   SPHQFTMKSKIKSLS+PTHY EVNHRTLK 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTLKV

Query:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        VVSYGPNIGHIPHDIRLKDPNLPLRSGNG GQNI
Subjt:  VVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

SwissProt top hits

e value

%identity

Alignment

Q31708 Ribosomal protein S4, mitochondrial

1.4e-46

74.26

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNS--SLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTL
        LER KKFGSEKVCLGSSFAEHKRMKRNL   +SLFLS RR++KNLNLPT   SPI  NS  SLYSN TY F SPH+ TMK +IK + +PTHYLEVN+RT 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNS--SLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTL

Query:  KVVVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        K VV YGPNIGHIPHDIRLKD NL L S NG GQNI
Subjt:  KVVVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein

1.1e-51

77.21

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNS--SLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTL
        LER KKFGSEKVCLGSSFAEHKRMKRNL   +SLFLS RR++KNLNLPT   SPI  NS  SLYSN TY F SPH+ TMK +IK + +PTHY EVNHRT 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNS--SLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTL

Query:  KVVVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        K VVSYGPNIGHIPHDIRLKDPNLPLRS NG GQNI
Subjt:  KVVVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

ATMG00290.1 mitochondrial ribosomal protein S4

1.1e-51

77.21

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Query:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNS--SLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTL
        LER KKFGSEKVCLGSSFAEHKRMKRNL   +SLFLS RR++KNLNLPT   SPI  NS  SLYSN TY F SPH+ TMK +IK + +PTHY EVNHRT 
Subjt:  LERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNS--SLYSNLTYYFTSPHQFTMKSKIKSLSVPTHYLEVNHRTL

Query:  KVVVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI
        K VVSYGPNIGHIPHDIRLKDPNLPLRS NG GQNI
Subjt:  KVVVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

Sequences

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CDS sequence

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ATGTCGCCTACTACGAAAATCCTGATTTTTGCAAGAGTTGTGTTCTTTTATGCAAGAAGAAGACTTGAAAGACCAAAGAAGTTTGGATCTGAAAAAGTATGCTTAGGAAG
TTCCTTTGCTGAGCACAAGAGAATGAAAAGAAATTTGTATCATTTTCAATCCCTATTCTTATCGAATAGAAGGCAGGAGAAAAACCTCAATCTTCCTACTGGAAAAAGAA
GTCCTATAGAAAGCAACTCTTCTTTATATAGTAATTTGACCTATTACTTCACATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGTCTCTCAGTACCTACTCAT
TATTTAGAGGTGAATCATAGAACACTAAAAGTTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAG
TGGAAATGGATGTGGTCAAAACATATAA

mRNA sequence

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Protein sequence

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MSPTTKILIFARVVFFYARRRLERPKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRQEKNLNLPTGKRSPIESNSSLYSNLTYYFTSPHQFTMKSKIKSLSVPTH
YLEVNHRTLKVVVSYGPNIGHIPHDIRLKDPNLPLRSGNGCGQNI

Cmc02g0053061 (gene) of Melon (Charmono) v1.1 genome