; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0053401 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0053401
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr02:20821501..20822403
RNA-Seq ExpressionCmc02g0053401
SyntenyCmc02g0053401
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036855.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-12173.6Show/hide
Query:  MGHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQK
        MG MQTESLGGKKYVLVVVDDYS+FTWV FLK K DTVK+CISL LNLQREKG+KIIRIRSDHGKEFDNEDLNNLCQ++GIHHEF+APITPQ+NGVVE+K
Subjt:  MGHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQK

Query:  NRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRV
        NR LQEMARVMIHA++ PLNFWAE VNT CHIH R+TTR GT +TLYELW GRKPNVKYFH+FGSTCYILA+R+YHRKWDVKS QGIFL YSQNSRAYRV
Subjt:  NRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRV

Query:  FNSISGTVMETINGLVNDFESSTTQTYDEDDETL---NIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITT
        FN  SGTVME IN +VNDFES+  Q   EDDET    ++      ++ K D Q +    NSN T  EVI + + + PSAH++KNHP SSIIGD SA ITT
Subjt:  FNSISGTVMETINGLVNDFESSTTQTYDEDDETL---NIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITT

Query:  RKK
        R+K
Subjt:  RKK

KAA0058241.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.3e-105100Show/hide
Query:  MARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISG
        MARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISG
Subjt:  MARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISG

Query:  TVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK
        TVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK
Subjt:  TVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK

KAA0060126.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.0e-11673.13Show/hide
Query:  GGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEMAR
        GG+KYVLVVVDDYSRFTWV FLKGKLDT K+CI+L LNLQREK +KIIRIR +HG EF+NEDLNN CQ++GIHHEF+APITPQ+NGVVE+KNRTLQEMAR
Subjt:  GGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEMAR

Query:  VMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISGTVM
        VMIHA++LPLNFWAEAVNT CHIHDR+TTRSGT VTLYELW GRKPN+KYFH+FGS CYILA+R YHRKWDVKS Q IFLGYSQNSRAYRVFN  SGTVM
Subjt:  VMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISGTVM

Query:  ETINGLVNDFESSTTQTYDEDDETLNIRVDYST---KVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK
        ETIN +VNDFES+  Q   E+DET       ST   ++ K ++Q D     S+ T  EVI + + LVPSAH++KNHP SS+IGDPSA ITTR+K
Subjt:  ETINGLVNDFESSTTQTYDEDDETLNIRVDYST---KVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK

KAA0064117.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.1e-11673.51Show/hide
Query:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKN
        G M+TESLG KKYVLVVVDDYSRFTWV F KGK DTV+ICI L LNLQREKGKKIIRI SDH KEFDNEDLNN  Q + IHHEFSAP    +   VE+KN
Subjt:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKN

Query:  RTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVF
        RTLQEMARVMIH ++LPL+F AEA+NT CHIH+RITTRSG  VTLYELWNGRK NVKYFHVFG+TCYILA+R+YHRKWDVK +QGIFL YS NS AYRVF
Subjt:  RTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVF

Query:  NSISGTVMETINGLVNDFESSTTQTYDEDDETLNIRVD---YSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTR
        N  SG VMETIN +VNDFES+  Q  DEDDET+NI VD    S +V KADA  DG+ INS   SKEVIADN E VPS H++KNHP SSIIGDP A I T+
Subjt:  NSISGTVMETINGLVNDFESSTTQTYDEDDETLNIRVD---YSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTR

Query:  KK
        KK
Subjt:  KK

TYK11800.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.8e-10795.19Show/hide
Query:  ENGVVEQKNRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYS
        ENGVVEQKNRTLQEMARVMIHA+HLPLNFWAEAVNTVCHIHDRITTRSGT VTLYELWNGRK NVKYFHVFGSTCYILANR+YHRKWDVKSKQGIFLGYS
Subjt:  ENGVVEQKNRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYS

Query:  QNSRAYRVFNSISGTVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPS
        QNSRAYRVFNSISGTVMETINGLVNDFES+ TQTYDEDDETLNIR+D STKVLKAD QADGTSINSNTTSKEVIADNSELV SAHMRKNHPPSSIIGDPS
Subjt:  QNSRAYRVFNSISGTVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPS

Query:  AAITTRKK
        AAITTRKK
Subjt:  AAITTRKK

TrEMBL top hitse value%identityAlignment
A0A5A7UXM7 Gag-pol polyprotein2.1e-105100Show/hide
Query:  MARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISG
        MARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISG
Subjt:  MARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISG

Query:  TVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK
        TVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK
Subjt:  TVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK

A0A5A7V0X1 Gag-pol polyprotein3.4e-11673.13Show/hide
Query:  GGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEMAR
        GG+KYVLVVVDDYSRFTWV FLKGKLDT K+CI+L LNLQREK +KIIRIR +HG EF+NEDLNN CQ++GIHHEF+APITPQ+NGVVE+KNRTLQEMAR
Subjt:  GGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEMAR

Query:  VMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISGTVM
        VMIHA++LPLNFWAEAVNT CHIHDR+TTRSGT VTLYELW GRKPN+KYFH+FGS CYILA+R YHRKWDVKS Q IFLGYSQNSRAYRVFN  SGTVM
Subjt:  VMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISGTVM

Query:  ETINGLVNDFESSTTQTYDEDDETLNIRVDYST---KVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK
        ETIN +VNDFES+  Q   E+DET       ST   ++ K ++Q D     S+ T  EVI + + LVPSAH++KNHP SS+IGDPSA ITTR+K
Subjt:  ETINGLVNDFESSTTQTYDEDDETLNIRVDYST---KVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK

A0A5A7VAS8 Gag-pol polyprotein4.4e-11673.51Show/hide
Query:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKN
        G M+TESLG KKYVLVVVDDYSRFTWV F KGK DTV+ICI L LNLQREKGKKIIRI SDH KEFDNEDLNN  Q + IHHEFSAP    +   VE+KN
Subjt:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKN

Query:  RTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVF
        RTLQEMARVMIH ++LPL+F AEA+NT CHIH+RITTRSG  VTLYELWNGRK NVKYFHVFG+TCYILA+R+YHRKWDVK +QGIFL YS NS AYRVF
Subjt:  RTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVF

Query:  NSISGTVMETINGLVNDFESSTTQTYDEDDETLNIRVD---YSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTR
        N  SG VMETIN +VNDFES+  Q  DEDDET+NI VD    S +V KADA  DG+ INS   SKEVIADN E VPS H++KNHP SSIIGDP A I T+
Subjt:  NSISGTVMETINGLVNDFESSTTQTYDEDDETLNIRVD---YSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTR

Query:  KK
        KK
Subjt:  KK

A0A5D3BA69 Gag-pol polyprotein9.2e-12273.6Show/hide
Query:  MGHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQK
        MG MQTESLGGKKYVLVVVDDYS+FTWV FLK K DTVK+CISL LNLQREKG+KIIRIRSDHGKEFDNEDLNNLCQ++GIHHEF+APITPQ+NGVVE+K
Subjt:  MGHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQK

Query:  NRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRV
        NR LQEMARVMIHA++ PLNFWAE VNT CHIH R+TTR GT +TLYELW GRKPNVKYFH+FGSTCYILA+R+YHRKWDVKS QGIFL YSQNSRAYRV
Subjt:  NRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRV

Query:  FNSISGTVMETINGLVNDFESSTTQTYDEDDETL---NIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITT
        FN  SGTVME IN +VNDFES+  Q   EDDET    ++      ++ K D Q +    NSN T  EVI + + + PSAH++KNHP SSIIGD SA ITT
Subjt:  FNSISGTVMETINGLVNDFESSTTQTYDEDDETL---NIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITT

Query:  RKK
        R+K
Subjt:  RKK

A0A5D3CK56 Gag-pol polyprotein3.8e-10795.19Show/hide
Query:  ENGVVEQKNRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYS
        ENGVVEQKNRTLQEMARVMIHA+HLPLNFWAEAVNTVCHIHDRITTRSGT VTLYELWNGRK NVKYFHVFGSTCYILANR+YHRKWDVKSKQGIFLGYS
Subjt:  ENGVVEQKNRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYS

Query:  QNSRAYRVFNSISGTVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPS
        QNSRAYRVFNSISGTVMETINGLVNDFES+ TQTYDEDDETLNIR+D STKVLKAD QADGTSINSNTTSKEVIADNSELV SAHMRKNHPPSSIIGDPS
Subjt:  QNSRAYRVFNSISGTVMETINGLVNDFESSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPS

Query:  AAITTRKK
        AAITTRKK
Subjt:  AAITTRKK

SwissProt top hitse value%identityAlignment
A0A0B7P3V8 Transposon Ty4-P Gag-Pol polyprotein5.9e-0924.11Show/hide
Query:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQ---REKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVE
        G + + +   K+Y+L++VD+ +R+   S    K +   I   +  N+Q    +  +K+  I SD G EF N+ +     S GIHH  ++      NG  E
Subjt:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQ---REKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVE

Query:  QKNRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKP---NVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNS
        +  RT+   A  ++   +L + FW  AV +  +I + +  +S   + L  +   R+P    +  F  FG    I  +   H+K        I L    NS
Subjt:  QKNRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKP---NVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNS

Query:  RAYRVFNSISGTVMETINGLVNDF
          Y+ F      ++ + N  + ++
Subjt:  RAYRVFNSISGTVMETINGLVNDF

P0C2J7 Transposon Ty4-H Gag-Pol polyprotein5.9e-0924.11Show/hide
Query:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQ---REKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVE
        G + + +   K+Y+L++VD+ +R+   S    K +   I   +  N+Q    +  +K+  I SD G EF N+ +     S GIHH  ++      NG  E
Subjt:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQ---REKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVE

Query:  QKNRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKP---NVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNS
        +  RT+   A  ++   +L + FW  AV +  +I + +  +S   + L  +   R+P    +  F  FG    I  +   H+K        I L    NS
Subjt:  QKNRTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKP---NVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNS

Query:  RAYRVFNSISGTVMETINGLVNDF
          Y+ F      ++ + N  + ++
Subjt:  RAYRVFNSISGTVMETINGLVNDF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-3332.89Show/hide
Query:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKN
        G M+ ES+GG KY +  +DD SR  WV  LK K    ++    +  ++RE G+K+ R+RSD+G E+ + +    C S GI HE + P TPQ NGV E+ N
Subjt:  GHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKN

Query:  RTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVF
        RT+ E  R M+    LP +FW EAV T C++ +R  +          +W  ++ +  +  VFG   +    ++   K D KS   IF+GY      YR++
Subjt:  RTLQEMARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVF

Query:  NSISGTVMETINGLVNDFESSTTQTYDE
        + +   V+ + + +  + E  T     E
Subjt:  NSISGTVMETINGLVNDFESSTTQTYDE

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.3e-1630.11Show/hide
Query:  KYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEMARVMI
        +Y ++ VD ++R+TW+  LK K    +  I+    L+     +I    SD+G EF    L       GI H  S P TP+ NG+ E+K+R + E    ++
Subjt:  KYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEMARVMI

Query:  HAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAY
            +P  +W  A     ++ +R+ T      + ++   G  PN     VFG  CY         K D KS+Q +FLGYS    AY
Subjt:  HAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.5e-1729.32Show/hide
Query:  SLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEM
        S+   +Y ++ VD ++R+TW+  LK K       I     ++     +I  + SD+G EF    L +     GI H  S P TP+ NG+ E+K+R + EM
Subjt:  SLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEM

Query:  ARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAY
           ++    +P  +W  A +   ++ +R+ T      + ++   G+ PN +   VFG  CY         K + KSKQ  F+GYS    AY
Subjt:  ARVMIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCATATGCAAACAGAAAGTCTGGGTGGAAAGAAGTATGTCTTAGTTGTTGTGGATGATTATTCAAGATTTACTTGGGTTTCTTTCTTGAAAGGAAAATTAGATAC
TGTTAAAATTTGTATCAGTCTATACTTGAACTTGCAACGTGAAAAAGGAAAAAAAATAATCAGGATCCGAAGTGATCATGGTAAGGAGTTTGATAATGAAGATCTTAATA
ATTTATGTCAGTCGGACGGTATACATCATGAATTTTCTGCTCCCATAACTCCACAGGAAAATGGAGTAGTGGAACAAAAAAATAGAACTCTACAAGAAATGGCACGAGTC
ATGATACATGCCGAACATTTACCTTTGAATTTTTGGGCAGAAGCTGTTAACACAGTGTGTCACATTCATGATAGAATCACTACTCGATCTGGAACGGCTGTCACCTTATA
TGAACTTTGGAATGGAAGAAAGCCAAATGTAAAGTATTTTCATGTATTTGGAAGTACTTGTTATATTCTAGCTAATAGAGATTATCATCGAAAGTGGGATGTGAAATCAA
AACAAGGAATCTTTCTTGGATATTCTCAGAATAGCCGAGCTTATAGAGTCTTCAATAGTATATCTGGCACAGTTATGGAAACAATCAATGGTTTGGTAAATGATTTTGAA
TCATCTACCACACAAACTTATGATGAGGATGATGAGACTCTAAATATACGGGTGGATTATTCTACGAAAGTCCTTAAAGCTGATGCTCAGGCAGATGGTACTAGTATAAA
CTCAAACACGACGTCTAAGGAAGTTATAGCTGATAACTCTGAACTTGTTCCTTCTGCACATATGAGAAAGAATCATCCACCAAGTTCTATAATTGGTGATCCTTCAGCTG
CAATTACTACCAGAAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTCATATGCAAACAGAAAGTCTGGGTGGAAAGAAGTATGTCTTAGTTGTTGTGGATGATTATTCAAGATTTACTTGGGTTTCTTTCTTGAAAGGAAAATTAGATAC
TGTTAAAATTTGTATCAGTCTATACTTGAACTTGCAACGTGAAAAAGGAAAAAAAATAATCAGGATCCGAAGTGATCATGGTAAGGAGTTTGATAATGAAGATCTTAATA
ATTTATGTCAGTCGGACGGTATACATCATGAATTTTCTGCTCCCATAACTCCACAGGAAAATGGAGTAGTGGAACAAAAAAATAGAACTCTACAAGAAATGGCACGAGTC
ATGATACATGCCGAACATTTACCTTTGAATTTTTGGGCAGAAGCTGTTAACACAGTGTGTCACATTCATGATAGAATCACTACTCGATCTGGAACGGCTGTCACCTTATA
TGAACTTTGGAATGGAAGAAAGCCAAATGTAAAGTATTTTCATGTATTTGGAAGTACTTGTTATATTCTAGCTAATAGAGATTATCATCGAAAGTGGGATGTGAAATCAA
AACAAGGAATCTTTCTTGGATATTCTCAGAATAGCCGAGCTTATAGAGTCTTCAATAGTATATCTGGCACAGTTATGGAAACAATCAATGGTTTGGTAAATGATTTTGAA
TCATCTACCACACAAACTTATGATGAGGATGATGAGACTCTAAATATACGGGTGGATTATTCTACGAAAGTCCTTAAAGCTGATGCTCAGGCAGATGGTACTAGTATAAA
CTCAAACACGACGTCTAAGGAAGTTATAGCTGATAACTCTGAACTTGTTCCTTCTGCACATATGAGAAAGAATCATCCACCAAGTTCTATAATTGGTGATCCTTCAGCTG
CAATTACTACCAGAAAGAAATAG
Protein sequenceShow/hide protein sequence
MGHMQTESLGGKKYVLVVVDDYSRFTWVSFLKGKLDTVKICISLYLNLQREKGKKIIRIRSDHGKEFDNEDLNNLCQSDGIHHEFSAPITPQENGVVEQKNRTLQEMARV
MIHAEHLPLNFWAEAVNTVCHIHDRITTRSGTAVTLYELWNGRKPNVKYFHVFGSTCYILANRDYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISGTVMETINGLVNDFE
SSTTQTYDEDDETLNIRVDYSTKVLKADAQADGTSINSNTTSKEVIADNSELVPSAHMRKNHPPSSIIGDPSAAITTRKK