CuGenDBv2

Gene ID	Cmc02g0053791
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr02:21138992..21139609
RNA-Seq Expression	Cmc02g0053791
Synteny	Cmc02g0053791
Gene Ontology terms	GO:0006468 - protein phosphorylation (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0016020 - membrane (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003676 - nucleic acid binding (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0034061 - DNA polymerase activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034938.1 putative Polyprotein [Cucumis melo var. makuwa]

7.7e-98

90.24

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Query:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE
        MNGK ERKNRTLTEL VAILLES AAPSWWGEIIKTVNYVLNRIPKSNSKTS YEVLKHK PNL+YLRTWGCLAYVRIP+P+RRKLAS+ YE VFIGYAE
Subjt:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE

Query:  NSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSL
        NSK YRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSS SSLPSIRIQTQDKE DPEPRRSKRARTVKDF EDFEMYNV+DPK LT+ALS 
Subjt:  NSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSL

Query:  IDANL
        +DANL
Subjt:  IDANL

KAA0042337.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.2e-53

71.86

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Query:  YVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGL
        Y+LN++  + +  S+   L     N+   + +   AYVRIPDPKRRKLASR YE VFIGYAENSK YRFYDLENKVIIESNDVDFFED+FPFKSRN    
Subjt:  YVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGL

Query:  YSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSLIDANL
            SGGSSSSSLPSIRIQTQDKE DPEPRRSKRART+KDFG+DFEMYNV+DPK LTEALSL+DANL
Subjt:  YSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSLIDANL

KAE9620734.1 putative RNA-directed DNA polymerase [Lupinus albus]

1.9e-48

65.24

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Query:  LLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESN
        +L S AAPSWWGEI+ TV YVLNR+PK+ SK S YE+ K++ PNL+Y RTWGCLAYVRIPDPKR KLASR YE VFIGYA NSK YRFYDL  KVIIESN
Subjt:  LLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESN

Query:  DVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDF
        D DF E KFPFK RN        SGG+SSS  P IR    D   + EPRRSKR RT +++G D+
Subjt:  DVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDF

RZB91890.1 putative receptor-like protein kinase [Glycine soja]

9.8e-45

62.13

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Query:  YVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGL
        +V   IPKS SKTS YE+LK + PNL+YLRTWGCLAYVRIPDPKR KLASR YE VFIGYA NSK YRFYDL  KVIIESND DF+E+KFPFK R+    
Subjt:  YVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGL

Query:  YSQTSGGSSSSSLPSIRIQT-QDKEEDPEPRRSKRARTVKDFGEDFEMYNVKD-PKYLTEALSLIDANL
            SGG+SS+ LP+I  +     E D EPRR KRAR  KD+G D+  Y +++ P  L EALS +DA+L
Subjt:  YSQTSGGSSSSSLPSIRIQT-QDKEEDPEPRRSKRARTVKDFGEDFEMYNVKD-PKYLTEALSLIDANL

RZC09450.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

1.6e-63

65.7

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Query:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE
        MNGKAERKNRT TELVVA +L S A   WWGEI+ TV YVLNRIPKS SKTS YE+LK + PNL+YLRTWGCLAYVRIPDPKR KLASR YE VFIGYA 
Subjt:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE

Query:  NSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQT-QDKEEDPEPRRSKRARTVKDFGEDFEMYNV-KDPKYLTEAL
        NSK YRFYDL  KVIIESND DF+E+KFPFK R+        SGG+SS+ LP+I  +     + D EPRR KRAR  KD+G D+  Y + +DP  L EAL
Subjt:  NSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQT-QDKEEDPEPRRSKRARTVKDFGEDFEMYNV-KDPKYLTEAL

Query:  SLIDANL
        S +DA+L
Subjt:  SLIDANL

TrEMBL top hits

e value

%identity

Alignment

A0A445KFK2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.8e-64

65.7

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Query:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE
        MNGKAERKNRT TELVVA +L S A   WWGEI+ TV YVLNRIPKS SKTS YE+LK + PNL+YLRTWGCLAYVRIPDPKR KLASR YE VFIGYA 
Subjt:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE

Query:  NSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQT-QDKEEDPEPRRSKRARTVKDFGEDFEMYNV-KDPKYLTEAL
        NSK YRFYDL  KVIIESND DF+E+KFPFK R+        SGG+SS+ LP+I  +     + D EPRR KRAR  KD+G D+  Y + +DP  L EAL
Subjt:  NSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQT-QDKEEDPEPRRSKRARTVKDFGEDFEMYNV-KDPKYLTEAL

Query:  SLIDANL
        S +DA+L
Subjt:  SLIDANL

A0A5D3CVC3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.6e-54

71.86

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Query:  YVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGL
        Y+LN++  + +  S+   L     N+   + +   AYVRIPDPKRRKLASR YE VFIGYAENSK YRFYDLENKVIIESNDVDFFED+FPFKSRN    
Subjt:  YVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGL

Query:  YSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSLIDANL
            SGGSSSSSLPSIRIQTQDKE DPEPRRSKRART+KDFG+DFEMYNV+DPK LTEALSL+DANL
Subjt:  YSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSLIDANL

A0A5D3DCJ1 Putative Polyprotein

3.7e-98

90.24

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Query:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE
        MNGK ERKNRTLTEL VAILLES AAPSWWGEIIKTVNYVLNRIPKSNSKTS YEVLKHK PNL+YLRTWGCLAYVRIP+P+RRKLAS+ YE VFIGYAE
Subjt:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE

Query:  NSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSL
        NSK YRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSS SSLPSIRIQTQDKE DPEPRRSKRARTVKDF EDFEMYNV+DPK LT+ALS 
Subjt:  NSKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSL

Query:  IDANL
        +DANL
Subjt:  IDANL

A0A6A4R5Q4 Putative RNA-directed DNA polymerase

9.3e-49

65.24

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Query:  LLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESN
        +L S AAPSWWGEI+ TV YVLNR+PK+ SK S YE+ K++ PNL+Y RTWGCLAYVRIPDPKR KLASR YE VFIGYA NSK YRFYDL  KVIIESN
Subjt:  LLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDLENKVIIESN

Query:  DVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDF
        D DF E KFPFK RN        SGG+SSS  P IR    D   + EPRRSKR RT +++G D+
Subjt:  DVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDF

A0A7N2N1S1 Integrase catalytic domain-containing protein

3.3e-46

54.68

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Query:  NGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAEN
        NG AERKNRTL EL  A+L+ES A   +WGE I T  +VLNR+P   S T+ +E+ K   PNL YLR WGCLAYVR+ DPK  KL  R     F+GYA N
Subjt:  NGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAEN

Query:  SKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKD-PKYLTEALSL
        S  YRF+DLENK+I ES D  F E+KFPFK +NSGG  +  S  SSS+S      Q Q+  E  EPRRSKRAR  KDFG D+ ++N+++ PK L EAL+ 
Subjt:  SKDYRFYDLENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKD-PKYLTEALSL

Query:  IDA
         DA
Subjt:  IDA

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.3e-12

33.06

Show/hide

Query:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKS---NSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIG
        +NG +ER  RT+TE    ++  ++   S+WGE + T  Y++NRIP     +S  + YE+  +K P L +LR +G   YV I + K+ K   + ++ +F+G
Subjt:  MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKS---NSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIG

Query:  YAENSKDYRFYDLENKVIIESNDV
        Y  N   ++ +D  N+  I + DV
Subjt:  YAENSKDYRFYDLENKVIIESNDV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.3e-14

28.4

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Query:  NGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYE-VLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE
        NG AER NRT+ E V ++L  ++   S+WGE ++T  Y++NR P         E V  +K  + ++L+ +GC A+  +P  +R KL  +    +FIGY +
Subjt:  NGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYE-VLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAE

Query:  NSKDYRFYDLENKVIIESNDVDFFEDK---------------------FPFKSRNSGGLYSQTSGGSSSSSLPSIRIQ---------------TQDKEED
            YR +D   K +I S DV F E +                      P  S N     S T   S     P   I+               TQ +E+ 
Subjt:  NSKDYRFYDLENKVIIESNDVDFFEDK---------------------FPFKSRNSGGLYSQTSGGSSSSSLPSIRIQ---------------TQDKEED

Query:  PEPRRSKRARTVKDFGEDFEMYNVKD---PKYLTEALSLIDAN
           RRS+R R         E   + D   P+ L E LS  + N
Subjt:  PEPRRSKRARTVKDFGEDFEMYNVKD---PKYLTEALSLIDAN

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATGGAAAAGCAGAAAGAAAGAATAGAACTTTGACTGAGTTAGTAGTTGCTATCTTACTTGAGTCAAGAGCAGCACCATCTTGGTGGGGTGAAATAATTAAGACTGT
TAATTATGTTCTTAATAGGATTCCTAAATCTAACAGTAAAACTTCATCATACGAAGTCCTTAAACATAAAACACCAAACTTGACTTATCTTAGAACTTGGGGCTGTCTAG
CTTATGTTAGAATACCTGATCCAAAAAGAAGGAAATTAGCAAGTAGAGTCTATGAATATGTCTTCATAGGATACGCTGAAAATAGTAAAGACTATAGATTCTATGACTTA
GAAAACAAAGTAATTATAGAATCGAATGACGTAGATTTTTTCGAGGACAAATTTCCTTTTAAATCTAGAAATAGTGGGGGCCTATATAGTCAAACTAGTGGGGGCTCAAG
TTCCAGTAGTCTACCTTCAATTAGGATCCAAACTCAAGACAAGGAAGAAGATCCTGAACCTAGAAGAAGCAAGAGAGCTAGAACAGTAAAAGACTTTGGAGAAGACTTCG
AAATGTACAACGTAAAAGATCCAAAATATCTAACAGAAGCATTATCATTAATAGATGCCAATTTATAG

mRNA sequence

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Protein sequence

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MNGKAERKNRTLTELVVAILLESRAAPSWWGEIIKTVNYVLNRIPKSNSKTSSYEVLKHKTPNLTYLRTWGCLAYVRIPDPKRRKLASRVYEYVFIGYAENSKDYRFYDL
ENKVIIESNDVDFFEDKFPFKSRNSGGLYSQTSGGSSSSSLPSIRIQTQDKEEDPEPRRSKRARTVKDFGEDFEMYNVKDPKYLTEALSLIDANL

Cmc02g0053791 (gene) of Melon (Charmono) v1.1 genome