CuGenDBv2

Gene ID	Cmc02g0054321
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II CP43 reaction center protein
Genome location	CMiso1.1chr02:21564379..21564672
RNA-Seq Expression	Cmc02g0054321
Synteny	Cmc02g0054321
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ARC99975.1 photosystem II CP43 chlorophyll apoprotein [Margyricarpus pinnatus]

1.5e-35

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

QIQ27449.1 photosystem II 44 kDa protein [Tetrapanax papyrifer]

1.5e-35

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

RZC79599.1 hypothetical protein C5167_042173 [Papaver somniferum]

1.5e-35

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

YP_009155424.1 PsbC [Panax quinquefolius]

1.5e-35

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

YP_010154462.1 photosystem II CP43 chlorophyll apoprotein [Ferula sinkiangensis]

1.5e-35

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

TrEMBL top hits

e value

%identity

Alignment

A0A0R6IKW5 Photosystem II CP43 reaction center protein

7.3e-36

84.27

Show/hide

Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

A0A411JZV0 Photosystem II CP43 reaction center protein

7.3e-36

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

A0A7H1KFU4 Photosystem II CP43 reaction center protein

7.3e-36

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

G9IAX1 Photosystem II CP43 reaction center protein

7.3e-36

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

W8CQA1 Photosystem II CP43 reaction center protein

7.3e-36

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

SwissProt top hits

e value

%identity

Alignment

A9LYI1 Photosystem II CP43 reaction center protein

9.8e-38

83.15

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW G  NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

Q0G9W6 Photosystem II CP43 reaction center protein

2.0e-38

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

Q3V538 Photosystem II CP43 reaction center protein

9.8e-38

83.15

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW G  NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

Q68S10 Photosystem II CP43 reaction center protein

2.0e-38

84.27

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW GG NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

Q70Y07 Photosystem II CP43 reaction center protein

9.8e-38

83.15

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Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFYPVETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW G  NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

7.7e-38

82.02

Show/hide

Query:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL
        L RFY VETLFNGTL LAGRDQETTGF WW  N R+I+LS KLLGAHVAHAGLIVFW G  NLFE+AHFV EKPMYEQ LILLPHLATL
Subjt:  LMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATL

Sequences

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CDS sequence

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ATGGCAACTCAAGATAATTTCCTTATGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGTTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCACTTGGTG
GATCAGAAATGTTCGAGTTATCGATTTATCTGATAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGTCGGAGGAAAGAACCTATTTGAAATGG
CTCATTTCGTACAAGAGAAGCCCATGTATGAACAAGAATTAATTTTACTTCCCCACCTAGCTACTTTAGATTGA

mRNA sequence

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Protein sequence

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MATQDNFLMRFYPVETLFNGTLVLAGRDQETTGFTWWIRNVRVIDLSDKLLGAHVAHAGLIVFWVGGKNLFEMAHFVQEKPMYEQELILLPHLATLD

Cmc02g0054321 (gene) of Melon (Charmono) v1.1 genome