CuGenDBv2

Gene ID	Cmc02g0054531
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Protein Ycf2
Genome location	CMiso1.1chr02:21606613..21607158
RNA-Seq Expression	Cmc02g0054531
Synteny	Cmc02g0054531
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016020 - membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

ASY96395.1 Ycf2 [Cucumis melo subsp. agrestis]

7.0e-55

89.31

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

ASY96830.1 Ycf2 [Cucumis melo var. momordica]

7.0e-55

89.31

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

QRW36598.1 hypothetical chloroplast RF21 [Cucumis melo]

7.0e-55

89.31

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

YP_004841827.1 hypothetical chloroplast RF21 [Cucumis melo subsp. melo]

7.0e-55

89.31

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

YP_009752963.1 Ycf2 protein [Momordica sessilifolia]

3.3e-52

85.07

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        ++KLCL QWNLISEISSKCL NLLL EE+IHRNNESP ISTHLR PNVWEFLYSILFLL + VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI
        +L DRYP    NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU72 Protein Ycf2

3.4e-55

89.31

Show/hide

Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

A0A249RYX8 Protein Ycf2

3.4e-55

89.31

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

A0A249RZ46 Protein Ycf2

3.4e-55

89.31

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

A0A249RZN4 Protein Ycf2

3.4e-55

89.31

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

G3ETW1 Protein Ycf2

3.4e-55

89.31

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        +RKLCLLQWNLISEISSKCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP+NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPKNSFWLKNLFLVALEQLGDSLEEI

SwissProt top hits

e value

%identity

Alignment

A0ZZ78 Protein Ycf2

5.2e-53

83.58

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        ++KLCL QWNLISEISSKCL N LL EE+IHRNNESPLISTHLR PNV EFLYSILFLL +  YLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI
        +L DRYP    NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI

B1A978 Protein Ycf2

1.2e-52

83.58

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        ++K CL QWNLISEISSKCL NLLL EE+IHRNNESPLISTHLR PNV EFLYSILFLL +  YLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI
        +L DRYP    NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI

Q2L949 Protein Ycf2

5.2e-53

83.58

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        ++KLCL QWNLISEISSKCL N LL EE+IHRNNESPLISTHLR PNV EFLYSILFLL +  YLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI
        +L DRYP    NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI

Q2QD30 Protein Ycf2

9.5e-55

85.82

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        R+KLCL QWNLISEIS KCLPNLLL EE+IHRNNESP ISTHLR PNV EFLYSILFLL I VYLV THLL VSRAYSELQT+FEKVKSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYP---KNSFWLKNLFLVALEQLGDSLEEI
        +L DRYP   +NSFWLKNLFLVALEQLGDSLEEI
Subjt:  ELFDRYP---KNSFWLKNLFLVALEQLGDSLEEI

Q49KT6 Protein Ycf2

1.7e-51

80.6

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        ++K CL QWNLISEISSKCL NLLL EE+IHRNNESPLISTHLR PNV EFLYSILFLL +  Y+V THLL VSRAYSELQT+FEKVKS MIPSYM+ELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI
        +L DRYP    NSFWLKNLFLVALE+LGDSLEEI
Subjt:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

4.7e-49

79.1

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        ++KLCL Q NLISEISSK L NLLL EE+IHRNNES LISTHLR PNV E LYSILFLL +  Y+V THLL VSRAYSELQT+FEK+KSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI
        +L DRYP    NSFWLKNLFLVALEQLGD LEEI
Subjt:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

4.7e-49

79.1

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Query:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR
        ++KLCL Q NLISEISSK L NLLL EE+IHRNNES LISTHLR PNV E LYSILFLL +  Y+V THLL VSRAYSELQT+FEK+KSLMIPSYMIELR
Subjt:  RRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELR

Query:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI
        +L DRYP    NSFWLKNLFLVALEQLGD LEEI
Subjt:  ELFDRYPK---NSFWLKNLFLVALEQLGDSLEEI

Sequences

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CDS sequence

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ATGGTTCCTTACTTCGACAGGAGAAAATTGTGTCTTCTACAATGGAATCTGATAAGTGAGATTTCGAGTAAGTGTTTACCCAATCTTCTTTTGTTCGAAGAAATTATTCA
TCGAAATAATGAGTCACCATTGATATCAACACATCTGAGATTGCCAAATGTTTGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTTTTATTGTTGTATATCTCGTTTGTA
CACATCTTCTTTTAGTTTCTCGAGCCTATAGTGAGTTACAGACAAAGTTCGAAAAGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAGAACTTTTCGAT
AGGTATCCCAAAAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTTTGGAACAATTAGGAGATTCTCTAGAAGAAATATGA

mRNA sequence

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Protein sequence

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MVPYFDRRKLCLLQWNLISEISSKCLPNLLLFEEIIHRNNESPLISTHLRLPNVWEFLYSILFLLFIVVYLVCTHLLLVSRAYSELQTKFEKVKSLMIPSYMIELRELFD
RYPKNSFWLKNLFLVALEQLGDSLEEI

Cmc02g0054531 (gene) of Melon (Charmono) v1.1 genome